Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq332 105 1e-17 >seq332 Length=18159 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| ||| || || || Sbjct 2007 ATTTGCATACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTG 2066 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | ||| || | ||| ||||| |||||||| | | ||| ||| Sbjct 2067 TAGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGA 2126 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || |||||||| || || | || | || || ||||| || Sbjct 2127 TCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAG 2186 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| ||||| ||||| || || || || || || || || || ||||| Sbjct 2187 GACTCAACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899616490812720