Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2637 170 6e-37 seq2087 122 3e-22 seq358 102 2e-16 seq481 91.5 4e-13 >seq2637 Length=17558 Score = 170 bits (188), Expect = 6e-37 Identities = 569/879 (65%), Gaps = 15/879 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||| ||| ||||| |||||| || ||| || || | ||||||||||| Sbjct 8049 GTACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTT 8108 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| | || || Sbjct 8109 GCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGC 8168 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | | || || || |||| |||| ||| Sbjct 8169 CTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 8228 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| ||||| | | | || |||||||| |||| || |||||||| Sbjct 8229 CTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCA 8288 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926 || || |||||| | || | ||| || || ||| |||||| ||| |||| Sbjct 8289 CTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGA---CACGCTTCATGAATAG 8345 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | |||||||| || || | || ||||| | |||||| || Sbjct 8346 ATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTT 8405 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | | | || || ||| | || |||||| || || ||||| || Sbjct 8406 CTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAA 8465 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | ||| | |||| |||||||| || ||||| | |||||| || |||||||| | Sbjct 8466 AGCACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCG 8525 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAGATG 156162 | ||| |||| ||| || ||||| | || ||||| || ||| || | | ||||| | Sbjct 8526 CAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCG-ATGTAGGCACCAGTGG 8584 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCA 156220 |||| | || || | ||| |||||||| || | ||| || ||||| || || Sbjct 8585 CACGAATTCTGTGGATGTTTAGACCAATACCTCCCG--CATTCTTGGAAATCATGGCACA 8642 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 |||| | || | | | || || ||||| ||| || | ||| | || |||| Sbjct 8643 GGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCA 8702 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 ||| | |||| |||| || |||||| || ||||| |||| ||||||| | || Sbjct 8703 TGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAA 8762 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 ||||| | ||||| | | ||||||||| || ||| | || ||||| || Sbjct 8763 GTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGAT 8822 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 | | | || | ||| |||||| ||||| ||||| ||||| ||||| | || Sbjct 8823 GCCAACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACG 8882 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || || |||| || || || || || || || ||||| Sbjct 8883 GAGGAGATATGATCGCTCAAGGGTCTTGAATCCAAAATA 8921 >seq2087 Length=9274 Score = 122 bits (134), Expect = 3e-22 Identities = 208/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||||| ||| | | |||||||||||| ||||||||| | || || Sbjct 4613 CATGACGTCTTCCAAGGCCTTCACAAGACGACGCTGAATGTAACCAGTTTCGGCAGTCTT 4672 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || | ||| |||||||| |||| || |||||||| | || || Sbjct 4673 GACAGCGGTATCGATCAAACCCTCACGACCAGCCATTGCGTGGAAGAAGAATTCGGTAGG 4732 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || || | || | | ||| |||| ||||||||||| | |||||| || | || Sbjct 4733 AGTGAGACCTCGAAGATACGAGTTCTCGACGAAACCACGAGACTCGGGAGAGTAATCATC 4792 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 |||||| ||||| |||| || | | || ||||| | || |||||||| || ||||| Sbjct 4793 CTTGGTGAAGTGAGGCAAAGTACGATACTTGAAGCCGAAAGGAATACGCTTGCCCTCAAC 4852 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||| || || | | | | ||||||| ||||| || | | |||||||| || Sbjct 4853 TGACTGTTGACCTACGAGTGCAGTCATCTGAGAAATGTTGATAGTGGAACCCTTGGATCC 4912 Query 302865 AG 302866 || Sbjct 4913 AG 4914 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| ||||||||| | || || || |||||| | ||||||||| Sbjct 3840 AGAATTTCCTTGAGACGAGGAACACCAAGAGTAACATT---CTTGGAAGACACACCAGCA 3896 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| |||| || | || || | ||||| ||||| || ||||||| Sbjct 3897 AAATGGAAAGTGTTCAATGTCATCTGGGTTGCGGGCTCTCCAATGGACTGGGCCGCAAGG 3956 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||| |||||||| Sbjct 3957 ACACCAACCATCTCTCCTGG 3976 >seq358 Length=50161 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | |||||| || || ||| | ||||| || | ||| | | | Sbjct 15760 ATGAGTCCACAGATGTCACACACGTGAACTCTGAATGCATCCGACACCTCAAACAATCTC 15701 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | || ||||| || |||||||||||||||||||||||||||||| Sbjct 15700 TCCTTCAAGAAAGCACTGGCGCCGTGAGAGATCATACAATCACGCTCCATTTCACCGAAA 15641 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||||||||| | ||| | |||||| ||||||| ||||| Sbjct 15640 CGCAAACCACCATCTCTAGCACGACCCTCCACAGGCTGGCGAGT 15597 >seq481 Length=22500 Score = 91.5 bits (100), Expect = 4e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || || ||||| | ||||||||| | | |||||| || |||||| | | Sbjct 2376 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTA 2317 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||| || || | || ||||| || || ||| ||| | | Sbjct 2316 CCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 2257 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || |||||| | || ||||||||| | | | || || ||| || || | Sbjct 2256 TCGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATG 2197 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | || |||| ||||||||||| || || Sbjct 2196 AGCTCATCTCCCGTGATGAGGGTCTTCACACCGACTTCGC 2157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471754030818027