Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 170 6e-37
seq2087 122 3e-22
seq358 102 2e-16
seq481 91.5 4e-13
>seq2637
Length=17558
Score = 170 bits (188), Expect = 6e-37
Identities = 569/879 (65%), Gaps = 15/879 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || ||||| ||| ||||| |||||| || ||| || || | |||||||||||
Sbjct 8049 GTACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTT 8108
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||||| || ||| ||||| |||| ||||| | || ||
Sbjct 8109 GCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGC 8168
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || || ||| || | | || || || |||| |||| |||
Sbjct 8169 CTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 8228
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| || ||| ||||| | | | || |||||||| |||| || ||||||||
Sbjct 8229 CTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCA 8288
Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926
|| || |||||| | || | ||| || || ||| |||||| ||| ||||
Sbjct 8289 CTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGA---CACGCTTCATGAATAG 8345
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
||| ||| | |||||||| || || | || ||||| | |||||| ||
Sbjct 8346 ATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTT 8405
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | | | || || ||| | || |||||| || || ||||| ||
Sbjct 8406 CTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAA 8465
Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| ||| | |||| |||||||| || ||||| | |||||| || |||||||| |
Sbjct 8466 AGCACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCG 8525
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAGATG 156162
| ||| |||| ||| || ||||| | || ||||| || ||| || | | ||||| |
Sbjct 8526 CAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCG-ATGTAGGCACCAGTGG 8584
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCA 156220
|||| | || || | ||| |||||||| || | ||| || ||||| || ||
Sbjct 8585 CACGAATTCTGTGGATGTTTAGACCAATACCTCCCG--CATTCTTGGAAATCATGGCACA 8642
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280
|||| | || | | | || || ||||| ||| || | ||| | || ||||
Sbjct 8643 GGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCA 8702
Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340
||| | |||| |||| || |||||| || ||||| |||| ||||||| | ||
Sbjct 8703 TGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAA 8762
Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400
||||| | ||||| | | ||||||||| || ||| | || ||||| ||
Sbjct 8763 GTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGAT 8822
Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460
| | | || | ||| |||||| ||||| ||||| ||||| ||||| | ||
Sbjct 8823 GCCAACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACG 8882
Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| || |||| || || || || || || || |||||
Sbjct 8883 GAGGAGATATGATCGCTCAAGGGTCTTGAATCCAAAATA 8921
>seq2087
Length=9274
Score = 122 bits (134), Expect = 3e-22
Identities = 208/302 (69%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||| | |||||||| ||| | | |||||||||||| ||||||||| | || ||
Sbjct 4613 CATGACGTCTTCCAAGGCCTTCACAAGACGACGCTGAATGTAACCAGTTTCGGCAGTCTT 4672
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || | ||| |||||||| |||| || |||||||| | || ||
Sbjct 4673 GACAGCGGTATCGATCAAACCCTCACGACCAGCCATTGCGTGGAAGAAGAATTCGGTAGG 4732
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
|| || | || | | ||| |||| ||||||||||| | |||||| || | ||
Sbjct 4733 AGTGAGACCTCGAAGATACGAGTTCTCGACGAAACCACGAGACTCGGGAGAGTAATCATC 4792
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
|||||| ||||| |||| || | | || ||||| | || |||||||| || |||||
Sbjct 4793 CTTGGTGAAGTGAGGCAAAGTACGATACTTGAAGCCGAAAGGAATACGCTTGCCCTCAAC 4852
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
||| || || | | | | ||||||| ||||| || | | |||||||| ||
Sbjct 4853 TGACTGTTGACCTACGAGTGCAGTCATCTGAGAAATGTTGATAGTGGAACCCTTGGATCC 4912
Query 302865 AG 302866
||
Sbjct 4913 AG 4914
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| ||||||||| | || || || |||||| | |||||||||
Sbjct 3840 AGAATTTCCTTGAGACGAGGAACACCAAGAGTAACATT---CTTGGAAGACACACCAGCA 3896
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||| |||| || | || || | ||||| ||||| || |||||||
Sbjct 3897 AAATGGAAAGTGTTCAATGTCATCTGGGTTGCGGGCTCTCCAATGGACTGGGCCGCAAGG 3956
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||| ||||||||
Sbjct 3957 ACACCAACCATCTCTCCTGG 3976
>seq358
Length=50161
Score = 102 bits (112), Expect = 2e-16
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | |||||| || || ||| | ||||| || | ||| | | |
Sbjct 15760 ATGAGTCCACAGATGTCACACACGTGAACTCTGAATGCATCCGACACCTCAAACAATCTC 15701
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| | || ||||| || ||||||||||||||||||||||||||||||
Sbjct 15700 TCCTTCAAGAAAGCACTGGCGCCGTGAGAGATCATACAATCACGCTCCATTTCACCGAAA 15641
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||||||||| | ||| | |||||| ||||||| |||||
Sbjct 15640 CGCAAACCACCATCTCTAGCACGACCCTCCACAGGCTGGCGAGT 15597
>seq481
Length=22500
Score = 91.5 bits (100), Expect = 4e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| || || ||||| | ||||||||| | | |||||| || |||||| | |
Sbjct 2376 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTA 2317
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| ||||| ||||| || || | || ||||| || || ||| ||| | |
Sbjct 2316 CCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 2257
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || |||||| | || ||||||||| | | | || || ||| || || |
Sbjct 2256 TCGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATG 2197
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | || |||| ||||||||||| || ||
Sbjct 2196 AGCTCATCTCCCGTGATGAGGGTCTTCACACCGACTTCGC 2157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471754030818027
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |