Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq89 131 2e-24 seq2637 91.5 2e-12 >seq89 Length=192087 Score = 131 bits (144), Expect = 2e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| |||||||||||||| || || |||| |||||| | || ||||| |||| Sbjct 18805 CCAACTACCTTGACATCAAGCCTCTCCTTGACGTTGGTTGCAAGACCGTCGCCAATATGA 18864 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 18865 TCAAGGGCAAGTCCCCCGAGGAGATCCGCAAAACCTTCAACATCA 18909 >seq2637 Length=17558 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || | || |||| ||| ||||| || | |||||| || | |||||||| Sbjct 8490 CTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGA 8549 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||| || || | |||||| || | ||| || | |||| | | || Sbjct 8550 GTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACC 8609 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || |||||| || | || || ||||| |||||||||||||| || Sbjct 8610 AATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTC 8669 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || || |||||||||| || || ||||| || || || | || | ||| || Sbjct 8670 AATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCGTACC 8729 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||| ||||| ||||| Sbjct 8730 AGCGGCAAAGAGTGTGGG 8747 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||||| || || ||||| ||||| || || ||||||||||||||||||||| | Sbjct 8354 TCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCA 8413 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||| || | |||| || ||||||||||| ||||| |||||| || || || || Sbjct 8414 GGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTG 8473 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 8474 GGCGCTTGTTGCCACC 8489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106862559953607