Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq89 131 2e-24
seq2637 91.5 2e-12
>seq89
Length=192087
Score = 131 bits (144), Expect = 2e-24
Identities = 92/105 (88%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| |||||||||||||| || || |||| |||||| | || ||||| ||||
Sbjct 18805 CCAACTACCTTGACATCAAGCCTCTCCTTGACGTTGGTTGCAAGACCGTCGCCAATATGA 18864
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 18865 TCAAGGGCAAGTCCCCCGAGGAGATCCGCAAAACCTTCAACATCA 18909
>seq2637
Length=17558
Score = 91.5 bits (100), Expect = 2e-12
Identities = 175/258 (68%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || | || |||| ||| ||||| || | |||||| || | ||||||||
Sbjct 8490 CTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGA 8549
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| |||||||| || || | |||||| || | ||| || | |||| | | ||
Sbjct 8550 GTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACC 8609
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || || |||||| || | || || ||||| |||||||||||||| ||
Sbjct 8610 AATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTC 8669
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| || |||||||||| || || ||||| || || || | || | ||| ||
Sbjct 8670 AATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCGTACC 8729
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||| ||||| |||||
Sbjct 8730 AGCGGCAAAGAGTGTGGG 8747
Score = 87.8 bits (96), Expect = 2e-11
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||||| || || ||||| ||||| || || ||||||||||||||||||||| |
Sbjct 8354 TCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCA 8413
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
|||| || | |||| || ||||||||||| ||||| |||||| || || || ||
Sbjct 8414 GGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTG 8473
Query 1628585 TGCGCTTGCCGCCGCC 1628600
||||||| ||| ||
Sbjct 8474 GGCGCTTGTTGCCACC 8489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106862559953607
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |