Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq332 107 2e-18
>seq332
Length=18159
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| |||| || | || || || |||||||| | ||||| || || |
Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||| || || || || ||||| || || || ||
Sbjct 1954 GACACGATTGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCAG 1895
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||| || || |||||||||||| | | || ||||| |||
Sbjct 1894 CAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAAC 1835
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| |||||||| || || || ||||||||
Sbjct 1834 ATCCAAAAGGAGTCTACTCTCCACTTGGT 1806
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || ||||| || || ||||| || || |
Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || |||| ||| | ||||| ||||| || || || || || || |||||
Sbjct 2182 GATACCATCGACAACGTTAAGTC-GAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCA 2124
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| | || ||||| || || || || |||||| | | | |||| || || ||
Sbjct 2123 GCAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAA 2064
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| |||||||| || || || |||||||| | || | ||||| ||
Sbjct 2063 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGTCTCCGCGGTGG 2016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449878642439880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |