Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq89 122 1e-21 seq2637 93.3 7e-13 >seq89 Length=192087 Score = 122 bits (134), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| ||||| || | || ||||||||||| ||||| | | Sbjct 18805 CCAACTACCTTGACATCAAGCCTCTCCTTGACGTTGGTTGCAAGACCGTCGCCAATATGA 18864 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| |||||||| ||||| ||||||| Sbjct 18865 TCAAGGGCAAGTCCCCCGAGGAGATCCGCAAAACCTTCAACATCA 18909 >seq2637 Length=17558 Score = 93.3 bits (102), Expect = 7e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||||| | | || ||||||||||| || || ||||||||||||||||||||| || Sbjct 8354 TCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCA 8413 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 |||| || | |||| | ||||||||||| ||||| |||||| || || || || Sbjct 8414 GGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTG 8473 Query 2071997 TGCGCTTGCCGCCGCC 2072012 ||||||| ||| || Sbjct 8474 GGCGCTTGTTGCCACC 8489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915887811354869