Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq332 93.3 3e-14 >seq332 Length=18159 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || || || | ||| ||| | Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| ||||| || ||| | ||| ||||||| Sbjct 2182 GATACCATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCAG 2123 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| |||||| || || || ||||| | | || || | ||||||||| Sbjct 2122 CAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAAC 2063 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||| | ||| |||| Sbjct 2062 ATCCAAAAGGAGTCTACTCTCCACTTGGT 2034 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||||| || ||||| || ||||| | ||| ||| | Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||||| ||||| || || | || || ||| Sbjct 1954 GACACGATTGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCAG 1895 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | ||| ||||| ||||||||||| | | || || || |||||| Sbjct 1894 CAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAAC 1835 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||| | ||| |||| Sbjct 1834 ATCCAAAAGGAGTCTACTCTCCACTTGGT 1806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398860412520619