Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq332 100 2e-16
>seq332
Length=18159
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || || || || ||||| ||||| || || | | ||| ||
Sbjct 2027 ACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCC 2086
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| || || ||| | || | | ||||||||||| ||||| ||||| ||
Sbjct 2087 ATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTT 2146
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||||| ||| || | || || | || | || || || || ||||||||||| |
Sbjct 2147 ATCTTG-AATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGA 2205
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| ||||| || | ||| || || || ||||||||
Sbjct 2206 TAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||||| ||||| || || |||||||| || || | | ||||||
Sbjct 2538 ACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACC 2597
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||| || |||||||| | |||| | ||| || ||||| ||||||||||| ||
Sbjct 2598 GTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTT 2657
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | |||||| | || | ||||| || |||||||| || |
Sbjct 2658 GTCCTG-AATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGA 2716
Query 29750 TAGTTTTGCCAGT 29762
| || ||||||||
Sbjct 2717 TGGTCTTGCCAGT 2729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385203373630311
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |