Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq332 100 2e-16 >seq332 Length=18159 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || || ||||| ||||| || || | | ||| || Sbjct 2027 ACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCC 2086 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || ||| | || | | ||||||||||| ||||| ||||| || Sbjct 2087 ATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTT 2146 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | || || | || | || || || || ||||||||||| | Sbjct 2147 ATCTTG-AATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGA 2205 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| ||||| || | ||| || || || |||||||| Sbjct 2206 TAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| ||||| || || |||||||| || || | | |||||| Sbjct 2538 ACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACC 2597 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | |||| | ||| || ||||| ||||||||||| || Sbjct 2598 GTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTT 2657 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | |||||| | || | ||||| || |||||||| || | Sbjct 2658 GTCCTG-AATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGA 2716 Query 29750 TAGTTTTGCCAGT 29762 | || |||||||| Sbjct 2717 TGGTCTTGCCAGT 2729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385203373630311