Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq332 102 8e-17 >seq332 Length=18159 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | || || || | ||||| || ||||| |||||||||||| Sbjct 1785 TGACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCG 1844 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 |||| || | || || || || ||||||||| ||||||| || ||||| || || Sbjct 1845 CTCAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGT 1904 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || || || || || ||| ||| || | | || | |||||| | || || Sbjct 1905 GGGATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCG 1964 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | || | |||||||| ||||| || || || || ||||||||| Sbjct 1965 ACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCATA 2015 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| || ||||| |||||||| ||| || || | || || ||||| || || Sbjct 2046 GTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTTCCC 2105 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | || ||||| |||||||| || || ||||| || || || ||| || || Sbjct 2106 GCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGACTTA 2165 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| || || ||||||| ||| | ||||||||||| | || Sbjct 2166 ACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTC 2225 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 2226 TTGACGAAGATCTGCATA 2243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488523413977200