Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq332 102 8e-17
>seq332
Length=18159
Score = 102 bits (112), Expect = 8e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241
|| || || || | ||| | || || || | ||||| || ||||| ||||||||||||
Sbjct 1785 TGACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCG 1844
Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301
|||| || | || || || || ||||||||| ||||||| || ||||| || ||
Sbjct 1845 CTCAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGT 1904
Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361
|| || || || || || ||| ||| || | | || | |||||| | || ||
Sbjct 1905 GGGATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCG 1964
Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
||||| | || | |||||||| ||||| || || || || |||||||||
Sbjct 1965 ACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCATA 2015
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
||||| || ||||| |||||||| ||| || || | || || ||||| || ||
Sbjct 2046 GTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTTCCC 2105
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| | || ||||| |||||||| || || ||||| || || || ||| || ||
Sbjct 2106 GCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGACTTA 2165
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | || | || |||| || || ||||||| ||| | ||||||||||| | ||
Sbjct 2166 ACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTC 2225
Query 137395 TTTACGAATATTTGCATA 137412
|| ||||| || ||||||
Sbjct 2226 TTGACGAAGATCTGCATA 2243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488523413977200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |