Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq332 132 9e-26
seq507 84.2 4e-11
>seq332
Length=18159
Score = 132 bits (146), Expect = 9e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || ||||| |||||||| || || || || || ||||| | | | ||
Sbjct 1799 ACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCC 1858
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || || ||||||||||| |||| || || || || || ||||| |||||
Sbjct 1859 ATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTT 1918
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| |||||||||| || || || |||||||| || | || |||||||| || ||
Sbjct 1919 ATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAAT 1978
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| ||||| ||||| ||||| || |||||
Sbjct 1979 AGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 120 bits (132), Expect = 6e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || ||||| |||||||| || || || || || || || |
Sbjct 2014 TACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGG 2073
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | || || || ||||| ||||| ||||| || || | || ||||| || |
Sbjct 2074 ACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGG 2133
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCT 82760
| || || ||||||||||||||||| | || || || || || ||||| | ||| ||
Sbjct 2134 GAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATC-TGAGGACTCA 2192
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| | ||| || |||||||| || | ||||| || || ||||||||
Sbjct 2193 ACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
>seq507
Length=44608
Score = 84.2 bits (92), Expect = 4e-11
Identities = 146/211 (69%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 82577 TCACC-TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635
||||| |||| || | | || ||||| ||||| || || || || ||||| || || |
Sbjct 34494 TCACCATACCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGT 34553
Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695
| || || ||| | | || || || ||||| || || || ||||| || | || || |
Sbjct 34554 AGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGT 34613
Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755
| || || || || ||||| || || ||||| | || ||||| || || || || | |
Sbjct 34614 CCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGG 34673
Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| || || | || ||||||||||| ||
Sbjct 34674 ACTCCACCTCAAGGGTGATCGTCTTGCCCGT 34704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981784793962769
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |