Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq507 107 2e-18
seq332 102 8e-17
seq1884 96.9 3e-15
>seq507
Length=44608
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||| ||||| || ||||| ||| | || | | | ||||||||
Sbjct 34523 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCA-TCCTCGAG 34581
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||||| ||| | || || ||||||||||| || |||||||| |||||||| |||
Sbjct 34582 TTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGAT 34641
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | || | |||||| ||| |||||| || | ||||| || |||||
Sbjct 34642 CTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTGCC 34701
Query 133634 GGT 133636
||
Sbjct 34702 CGT 34704
>seq332
Length=18159
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| || || || |||||||||| || ||| | | | ||||| |||||||| ||
Sbjct 1818 GTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCA-TCCTCCAGCTGCTTACC 1876
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || ||||||||||| || ||||| || ||||| || |||||| |||
Sbjct 1877 AGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTTTGACTT 1936
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| |||||| | || ||| || || | || | || ||||| |||| |||
Sbjct 1937 GACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGTCAAAGT 1996
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || || |||||
Sbjct 1997 CTTAACAAAGATTTGCAT 2014
Score = 98.7 bits (108), Expect = 1e-15
Identities = 129/176 (73%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| ||||| || ||||| || | ||| ||| ||||||||||||||||||
Sbjct 2557 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 2615
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || || || ||||| ||||| || || |||||||| ||||| |||
Sbjct 2616 AGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTT 2675
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
|| | || | |||||| ||| ||| || || | ||||| ||| ||||| ||||
Sbjct 2676 GACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGTCA 2731
>seq1884
Length=68653
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||| ||||| || ||| |||| || ||||||||||| || || ||||| |||||
Sbjct 47011 TCCTCGAGTTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTA 47070
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||||| | ||| || || | |||| |
Sbjct 47071 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGATGACTCGACCTCCAAAGTGATG 47130
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651
|| ||||| || ||||| || |||||
Sbjct 47131 GTCTTGCCAGTAAGAGTCTTGACGAA 47156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483400429856040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |