Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq507 107 2e-18 seq332 102 8e-17 seq1884 96.9 3e-15 >seq507 Length=44608 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| | || | | | |||||||| Sbjct 34523 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCA-TCCTCGAG 34581 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 34582 TTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGAT 34641 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | |||||| ||| |||||| || | ||||| || ||||| Sbjct 34642 CTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTGCC 34701 Query 133634 GGT 133636 || Sbjct 34702 CGT 34704 >seq332 Length=18159 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || |||||||||| || ||| | | | ||||| |||||||| || Sbjct 1818 GTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCA-TCCTCCAGCTGCTTACC 1876 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || ||||| || ||||| || |||||| ||| Sbjct 1877 AGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTTTGACTT 1936 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||||| | || ||| || || | || | || ||||| |||| ||| Sbjct 1937 GACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGTCAAAGT 1996 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 1997 CTTAACAAAGATTTGCAT 2014 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | ||| ||| |||||||||||||||||| Sbjct 2557 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 2615 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || || ||||| ||||| || || |||||||| ||||| ||| Sbjct 2616 AGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTT 2675 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | |||||| ||| ||| || || | ||||| ||| ||||| |||| Sbjct 2676 GACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGTCA 2731 >seq1884 Length=68653 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| ||||| || ||| |||| || ||||||||||| || || ||||| ||||| Sbjct 47011 TCCTCGAGTTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTA 47070 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| | ||| || || | |||| | Sbjct 47071 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGATGACTCGACCTCCAAAGTGATG 47130 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| || ||||| || ||||| Sbjct 47131 GTCTTGCCAGTAAGAGTCTTGACGAA 47156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483400429856040