Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 174 4e-38
seq481 93.3 1e-13
>seq2637
Length=17558
Score = 174 bits (192), Expect = 4e-38
Identities = 502/761 (66%), Gaps = 21/761 (3%)
Strand=Plus/Minus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|||||||| ||||| || ||||| || | ||| | || ||| || ||||| |||| |
Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTGCT 8862
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|| || |||||||| ||| || | || || ||| |||| || || || | ||||| |
Sbjct 8861 GAGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGAG 8802
Query 110424 GCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTC 110478
|||| |||||| || |||||| ||| || | | | |||||| | |
Sbjct 8801 GCTGCTATTGAGACATACAACTTGATGTC--AAGCAA---GTACTTCACTCATGCATCAC 8747
Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAA 110538
| || || ||| ||| || || | || | |||| ||||| ||| | | |
Sbjct 8746 CCACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACA 8687
Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598
| || || ||| ||||| || || || || | || || | ||| | ||||| |
Sbjct 8686 TGAAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCA 8627
Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658
| || | ||||| |||||| | || | || ||||| | | || || | ||||
Sbjct 8626 AGAATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCG 8567
Query 110659 CAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717
| | || || || |||| ||| ||||||| ||||| ||||||||||| |||||
Sbjct 8566 CTGGTACCAACGGAAACTCCAAC-GGAATTGTTCCCATGTTGCGAGTCTTCAACAACACT 8508
Query 110718 GCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774
|| | |||||| | || ||||| ||| | || | || |||||||| |||||
Sbjct 8507 GCTAGATATGTTGACCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAG 8448
Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834
|| ||||| | ||| | || || | | | || || || || || || || || |||
Sbjct 8447 CCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAA 8388
Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894
| || || ||| | || ||||| |||||||| | ||| |||||||||| |||| |
Sbjct 8387 GTTCGTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTG-T 8329
Query 110895 CAAGAA-AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953
| |||| || | | |||| |||||||||| || || | ||||| | |||||||
Sbjct 8328 CGAGAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGT 8269
Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013
|| || | ||||| || | || ||||| || || || || || |||||| ||||||
Sbjct 8268 CTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAA 8209
Query 111014 -ACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGA 111052
|| | || | |||||| | ||||||| | ||||| ||
Sbjct 8208 GACTA--TCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGA 8170
>seq481
Length=22500
Score = 93.3 bits (102), Expect = 1e-13
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| || || ||||| || || |||||| | | |||||||||||| | |||
Sbjct 2376 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTA 2317
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | | ||||| || || || |||||| ||||| ||||| || ||| | |
Sbjct 2316 CCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 2257
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| | ||||||||| | ||||||||||| ||||| | || || | || ||||||
Sbjct 2256 TCGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATG 2197
Query 131967 AATTCATCTCGAGAGATGA 131985
| ||||||| | |||||
Sbjct 2196 AGCTCATCTCCCGTGATGA 2178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186761540442531
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |