Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2637 174 4e-38 seq481 93.3 1e-13 >seq2637 Length=17558 Score = 174 bits (192), Expect = 4e-38 Identities = 502/761 (66%), Gaps = 21/761 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| || ||||| || | ||| | || ||| || ||||| |||| | Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTGCT 8862 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || || |||||||| ||| || | || || ||| |||| || || || | ||||| | Sbjct 8861 GAGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGAG 8802 Query 110424 GCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTC 110478 |||| |||||| || |||||| ||| || | | | |||||| | | Sbjct 8801 GCTGCTATTGAGACATACAACTTGATGTC--AAGCAA---GTACTTCACTCATGCATCAC 8747 Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAA 110538 | || || ||| ||| || || | || | |||| ||||| ||| | | | Sbjct 8746 CCACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACA 8687 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | || || ||| ||||| || || || || | || || | ||| | ||||| | Sbjct 8686 TGAAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCA 8627 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 | || | ||||| |||||| | || | || ||||| | | || || | |||| Sbjct 8626 AGAATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCG 8567 Query 110659 CAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 | | || || || |||| ||| ||||||| ||||| ||||||||||| ||||| Sbjct 8566 CTGGTACCAACGGAAACTCCAAC-GGAATTGTTCCCATGTTGCGAGTCTTCAACAACACT 8508 Query 110718 GCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || | |||||| | || ||||| ||| | || | || |||||||| ||||| Sbjct 8507 GCTAGATATGTTGACCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAG 8448 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 || ||||| | ||| | || || | | | || || || || || || || || ||| Sbjct 8447 CCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAA 8388 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | || || ||| | || ||||| |||||||| | ||| |||||||||| |||| | Sbjct 8387 GTTCGTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTG-T 8329 Query 110895 CAAGAA-AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 | |||| || | | |||| |||||||||| || || | ||||| | ||||||| Sbjct 8328 CGAGAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGT 8269 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013 || || | ||||| || | || ||||| || || || || || |||||| |||||| Sbjct 8268 CTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAA 8209 Query 111014 -ACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGA 111052 || | || | |||||| | ||||||| | ||||| || Sbjct 8208 GACTA--TCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGA 8170 >seq481 Length=22500 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| || || ||||| || || |||||| | | |||||||||||| | ||| Sbjct 2376 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTA 2317 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | | ||||| || || || |||||| ||||| ||||| || ||| | | Sbjct 2316 CCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 2257 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||||||| | ||||||||||| ||||| | || || | || |||||| Sbjct 2256 TCGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATG 2197 Query 131967 AATTCATCTCGAGAGATGA 131985 | ||||||| | ||||| Sbjct 2196 AGCTCATCTCCCGTGATGA 2178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186761540442531