Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq332 93.3 3e-14
>seq332
Length=18159
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || ||||| ||| ||||| |||||||| |||||
Sbjct 2015 ACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 2074
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || | || || | ||| ||||| |||||||| | |||||||||||| | ||
Sbjct 2075 CAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGG 2134
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || || || ||| ||| | | ||| | ||| | ||| || || || |
Sbjct 2135 AATGCCCTCCTTATCTTGAATCTTC-GACTTAACGTTGTCGATGGTATCTGAGGACTCAA 2193
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| ||||| || || || || | || || || ||||||||||||
Sbjct 2194 CTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 2243
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | || | ||| || ||| ||| || || ||||| || |||||
Sbjct 2243 ACCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 2302
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| |||| || | ||| || ||||| ||||||||||| ||||| || | ||
Sbjct 2303 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGG 2362
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| ||| || | | ||||| ||| | ||| ||||| || || |
Sbjct 2363 AATGCCCTCCTTGTCCTGAATCTT-GGACTTAACATTGTCGATGGTATCGCTGGACTCAA 2421
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| |||| ||||| || || || ||
Sbjct 2422 CCTCAAGGGTGATGGTCTTGCCGGT 2446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328690495504320
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |