Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq332 91.5 3e-13
>seq332
Length=18159
Score = 91.5 bits (100), Expect = 3e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || || || |||||||| || || ||||| | || || ||| |
Sbjct 1990 ACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCGGACACGATTGACAACGTCAAGTCA 1931
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|||||||| || || || ||||| || ||| || |||| ||||| || || |||
Sbjct 1930 AAGATTCAGGATAAGGAGGGAATCCCACCTGACCAGCAGCGACTGATCTTTGCTGGTAAG 1871
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||| ||||| | || ||| |||||||||| |||| || ||||||||||| |||
Sbjct 1870 CAGCTGGAGGATGGCCGTACGTTGAGCGATTACAACATCCAAAAGGAGTCTACTCTCCAC 1811
Score = 87.8 bits (96), Expect = 4e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || || || |||||| | ||||| || || ||
Sbjct 2239 CAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCAGAT 2180
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||||||||| || || || ||| ||||| ||
Sbjct 2179 ACCATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCAGCAG 2120
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || || || || |||||||| | || ||||| | || ||| |||| |||||| ||
Sbjct 2119 CGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAACATC 2060
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
|| || ||||||||||| |||
Sbjct 2059 CAAAAGGAGTCTACTCTCCAC 2039
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|||||||| || || || || ||| |||||| ||| | || |||||||| || |||
Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| | || || || | ||| | | || |||||| | ||||| ||||| |||||||||
Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550
Query 206374 CTTGTTTTGAGACTTCG 206390
|||||| | | |||||
Sbjct 2549 CTTGTTCTCCGTCTTCG 2533
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | | ||||||||||||||| ||||| ||||| | || ||||||| | |||
Sbjct 2533 CGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTG 2592
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| || || || |||||||| || |||||||| || ||||||||
Sbjct 2593 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTG 2636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181769756051691
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |