Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq481 114 2e-19 >seq481 Length=22500 Score = 114 bits (126), Expect = 2e-19 Identities = 208/302 (69%), Gaps = 17/302 (6%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | || | Sbjct 2767 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATC 2709 Query 1455835 TC-----GGCGC----CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATT 1455885 | || | |||| | | || | || | ||||||||||| | | Sbjct 2708 TGTCTAAGGATCTTCACGACTGGAACAACAGA------CTCAATGACGACGAGCGTTACT 2655 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 |||| ||||| || || || || ||| || ||| || ||||| ||||||||| Sbjct 2654 TCATTTCCCACGTTCTTGCATTCTT-CGCTGCATCCGACGGAATCGTCAACGAGAACCTT 2596 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || ||||| | || ||||| | ||||||||||| | || ||||| ||||| Sbjct 2595 GTCGAGCGCTTCAGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAA 2536 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| || || ||||| ||||| ||||| || ||| ||||| Sbjct 2535 ATCATGATGGAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAG 2476 Query 1456066 GA 1456067 || Sbjct 2475 GA 2474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177486060854102