Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq481 114 2e-19
>seq481
Length=22500
Score = 114 bits (126), Expect = 2e-19
Identities = 208/302 (69%), Gaps = 17/302 (6%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | || |
Sbjct 2767 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATC 2709
Query 1455835 TC-----GGCGC----CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATT 1455885
| || | |||| | | || | || | ||||||||||| | |
Sbjct 2708 TGTCTAAGGATCTTCACGACTGGAACAACAGA------CTCAATGACGACGAGCGTTACT 2655
Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945
|||| ||||| || || || || ||| || ||| || ||||| |||||||||
Sbjct 2654 TCATTTCCCACGTTCTTGCATTCTT-CGCTGCATCCGACGGAATCGTCAACGAGAACCTT 2596
Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005
| || ||||| | || ||||| | ||||||||||| | || ||||| |||||
Sbjct 2595 GTCGAGCGCTTCAGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAA 2536
Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065
||| || || ||||||||||| || || ||||| ||||| ||||| || ||| |||||
Sbjct 2535 ATCATGATGGAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAG 2476
Query 1456066 GA 1456067
||
Sbjct 2475 GA 2474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177486060854102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |