Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2637 145 8e-30 seq332 104 2e-17 seq1884 84.2 2e-11 >seq2637 Length=17558 Score = 145 bits (160), Expect = 8e-30 Identities = 538/839 (64%), Gaps = 13/839 (2%) Strand=Plus/Minus Query 7563 TCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTT 7622 |||||| ||| | ||||||||||||| ||||| ||||| || || || || || || | Sbjct 8853 TCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGAGGCTGCTAT 8794 Query 7623 GGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGC 7682 || || ||| | ||||||| || | || || || || || ||||| | ||||| Sbjct 8793 TGAGACATACAACTTGATGTCAAGCAAGTACTTCACTCATGCATCACCCACACTCTTTGC 8734 Query 7683 CGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 ||| || || | |||| | || || || || | | |||| ||||| || Sbjct 8733 CGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATGAAGGAAGATAG 8674 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||| |||||||| ||| |||| || | || |||| |||||||| | | || || Sbjct 8673 CATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGAATGCGGGAGG 8614 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||||| ||| | || | || |||| ||| | ||||| |||||||| Sbjct 8613 TATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGCTGGTACCAACGG 8554 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 ||| ||| ||| | | ||||||||||| || ||||| ||| | | || |||| || Sbjct 8553 AAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCTAGATATGTTGA 8494 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || |||||| ||| || || ||||| | ||||| |||||||| || Sbjct 8493 CCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCATGGCACGCCGA 8434 Query 7980 CATTTACGCAGT-GCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038 ||| || ||| || | ||||| ||| || || || || |||| Sbjct 8433 TGTTTTCG-AGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTCGTGCTCGCG 8375 Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCAC 8098 |||| |||| | |||||| | |||||||| || |||| ||| || | |||| Sbjct 8374 ATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCG 8315 Query 8099 AATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158 | ||| | || ||||||||| || |||||| || | || |||||| | | Sbjct 8314 AGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGT 8255 Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG----TGAAA 8214 | || ||||| | | ||||| || || | | | | | ||||| | || Sbjct 8254 TCGAGGCTCTGTACGAGAAGTACGA----GAAGGAGGGCAAGGGTCGCAAGACTATCAAG 8199 Query 8215 GCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274 || | | || | |||| |||| ||||| ||| ||||| | || | |||| Sbjct 8198 GCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATG 8139 Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334 || ||||| || || |||||| || ||||| || | ||| | || || || | || Sbjct 8138 CTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATCCGAAGC 8079 Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 || ||||| |||||||||| ||||| |||| ||||| | || || ||||| Sbjct 8078 TCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTGCTGTCTGCAA 8020 >seq332 Length=18159 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || |||||||| |||||||||||| Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || || || || |||||||| | |||||||||||| || || Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGA 2135 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || || || ||| | || || || || || || Sbjct 2136 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACT 2195 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || ||||| | || || ||||| || ||||| Sbjct 2196 TCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || ||||| ||||| || ||||| |||||| Sbjct 2244 CCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 2303 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||| || ||||||||||| ||||| || || || Sbjct 2304 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 2363 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || ||| | || ||| || || || Sbjct 2364 ATGCCCTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACC 2423 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || || || ||||| || ||||| | || || |||| Sbjct 2424 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| |||||||||||||| | ||| || ||| ||| Sbjct 2545 ACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCG 2604 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| || || || || || || || || || || || ||| Sbjct 2605 AGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGA 2664 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | |||||| || || || || || || ||||| || Sbjct 2665 ATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTG 2724 Query 134685 CCGGT 134689 || || Sbjct 2725 CCAGT 2729 >seq1884 Length=68653 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| || ||| | || ||||| || || || || |||| Sbjct 46976 CCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAA 47035 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || || || ||||| || || || || || || ||||| || Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || || || || | ||| ||||| || || || | ||| || |||| Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155 Query 134704 A 134704 | Sbjct 47156 A 47156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505377103774920