Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 145 8e-30
seq332 104 2e-17
seq1884 84.2 2e-11
>seq2637
Length=17558
Score = 145 bits (160), Expect = 8e-30
Identities = 538/839 (64%), Gaps = 13/839 (2%)
Strand=Plus/Minus
Query 7563 TCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTT 7622
|||||| ||| | ||||||||||||| ||||| ||||| || || || || || || |
Sbjct 8853 TCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGAGGCTGCTAT 8794
Query 7623 GGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGC 7682
|| || ||| | ||||||| || | || || || || || ||||| | |||||
Sbjct 8793 TGAGACATACAACTTGATGTCAAGCAAGTACTTCACTCATGCATCACCCACACTCTTTGC 8734
Query 7683 CGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742
||| || || | |||| | || || || || | | |||| ||||| ||
Sbjct 8733 CGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATGAAGGAAGATAG 8674
Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802
||| |||||||| ||| |||| || | || |||| |||||||| | | || ||
Sbjct 8673 CATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGAATGCGGGAGG 8614
Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862
|| ||||| ||| | || | || |||| ||| | ||||| ||||||||
Sbjct 8613 TATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGCTGGTACCAACGG 8554
Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922
||| ||| ||| | | ||||||||||| || ||||| ||| | | || |||| ||
Sbjct 8553 AAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCTAGATATGTTGA 8494
Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979
|||||| || |||||| ||| || || ||||| | ||||| |||||||| ||
Sbjct 8493 CCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCATGGCACGCCGA 8434
Query 7980 CATTTACGCAGT-GCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038
||| || ||| || | ||||| ||| || || || || ||||
Sbjct 8433 TGTTTTCG-AGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTCGTGCTCGCG 8375
Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCAC 8098
|||| |||| | |||||| | |||||||| || |||| ||| || | ||||
Sbjct 8374 ATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCG 8315
Query 8099 AATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158
| ||| | || ||||||||| || |||||| || | || |||||| | |
Sbjct 8314 AGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGT 8255
Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG----TGAAA 8214
| || ||||| | | ||||| || || | | | | | ||||| | ||
Sbjct 8254 TCGAGGCTCTGTACGAGAAGTACGA----GAAGGAGGGCAAGGGTCGCAAGACTATCAAG 8199
Query 8215 GCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274
|| | | || | |||| |||| ||||| ||| ||||| | || | ||||
Sbjct 8198 GCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATG 8139
Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334
|| ||||| || || |||||| || ||||| || | ||| | || || || | ||
Sbjct 8138 CTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATCCGAAGC 8079
Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393
|| ||||| |||||||||| ||||| |||| ||||| | || || |||||
Sbjct 8078 TCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTGCTGTCTGCAA 8020
>seq332
Length=18159
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || || || |||||||| ||||||||||||
Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || || || || || |||||||| | |||||||||||| || ||
Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGA 2135
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || |||||||| || || || ||| | || || || || || ||
Sbjct 2136 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACT 2195
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| || || || ||||| | || || ||||| || |||||
Sbjct 2196 TCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||||| || || ||||| ||||| || ||||| ||||||
Sbjct 2244 CCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 2303
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | ||| || || || ||||| || ||||||||||| ||||| || || ||
Sbjct 2304 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 2363
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || ||||| || || || ||| | || ||| || || ||
Sbjct 2364 ATGCCCTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACC 2423
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
|| || || ||||| || ||||| | || || ||||
Sbjct 2424 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460
Score = 82.4 bits (90), Expect = 8e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || ||||| ||||| |||||||||||||| | ||| || ||| |||
Sbjct 2545 ACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCG 2604
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| || || |||| || || || || || || || || || || || |||
Sbjct 2605 AGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGA 2664
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| || | |||||| || || || || || || ||||| ||
Sbjct 2665 ATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTG 2724
Query 134685 CCGGT 134689
|| ||
Sbjct 2725 CCAGT 2729
>seq1884
Length=68653
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || ||||||||||| || ||| | || ||||| || || || || ||||
Sbjct 46976 CCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAA 47035
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| |||||||| || || || ||||| || || || || || || ||||| ||
Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||||| || || || || | ||| ||||| || || || | ||| || ||||
Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155
Query 134704 A 134704
|
Sbjct 47156 A 47156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505377103774920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |