Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2637 217 2e-51 seq481 104 3e-17 >seq2637 Length=17558 Score = 217 bits (240), Expect = 2e-51 Identities = 587/888 (66%), Gaps = 14/888 (2%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 |||||| || || || | ||| || |||||| ||| || || |||||||| || || || Sbjct 8085 GATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAA 8144 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || || | |||| |||| || || | ||||| ||| || || Sbjct 8145 TGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGAT 8204 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCA 69525 |||||| || ||| ||| || || || || | ||| | |||| ||||| ||| Sbjct 8205 A---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCC--TCGAACTCA 8259 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || | |||||| |||| ||||| || ||||| || ||||| | | |||| | | Sbjct 8260 TCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCG 8319 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCT 69644 | | || || || ||||| ||||||||||||||||| | || ||| |||||||| | Sbjct 8320 TTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACA-AGGCATAGAAGAGATCGCG 8378 Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGA 69704 | | | ||| || || || || ||| || || || |||| | || ||| | Sbjct 8379 AGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGC 8438 Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764 |||||||| || || || || || | | || || || || || || ||||| || | Sbjct 8439 GTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAAC 8498 Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824 ||||| |||||||| || |||||| || ||| |||| ||| || || || || || || Sbjct 8499 ATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTT 8558 Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCC 69884 || |||| || || || | || ||||| | || |||||| || ||||| Sbjct 8559 GGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCC 8618 Query 69885 TGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATC 69944 || | || || || | ||||| || | ||||| || || || || |||||||| Sbjct 8619 CGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATC 8678 Query 69945 ATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAA 70004 || |||||| | ||| || || ||| | ||| ||| || || || ||| Sbjct 8679 TTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAA 8738 Query 70005 TAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGC 70064 | ||| || ||||| |||||||| | || || | || |||||||| |||||||| Sbjct 8739 GAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGC 8798 Query 70065 TGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || |||||| ||| | || || || | ||| || ||||| | |||||| ||||| | Sbjct 8799 AGCCTCGATATCCTCACCG-TGGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGC 8857 Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183 | || | | || || | | || |||||| || || || || || |||| Sbjct 8858 GCTCAGCAATCTTGCCATCGAGACGGAGGAGATATGATCGCTCAAGGGTCTTGAATCCAA 8917 Query 70184 AATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 |||| | ||| ||||| | ||||| | ||| |||| || |||| Sbjct 8918 AATATTGGTAGTTGAAGTCACGATCGTAGACAATGGCAGAGTTGAGTT 8965 >seq481 Length=22500 Score = 104 bits (114), Expect = 3e-17 Identities = 290/443 (65%), Gaps = 4/443 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||||||||| |||||||| || |||||||| || || || || || | | || || || Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||||| || || || || || | || || ||| | | || | | || Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACTTTCTCATTGCCAAGGGCGAGAAG 1981 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 | | ||| ||||| || || |||||| ||||||| | | ||||| || | || Sbjct 1982 GAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAAG 2041 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || |||||||| || | || |||| || || |||||||| || || | Sbjct 2042 AGCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGAC 2101 Query 39565 CGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || || || | | | || || | ||| || || ||| | | ||| ||| Sbjct 2102 --ATCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCATGCG 2159 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 ||||| || || |||||||| | || | || || || || || || || | | Sbjct 2160 AAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCC 2219 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || ||||||||||| || | |||||| |||| || || || || || |||||||| || Sbjct 2220 ATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACCC 2279 Query 39743 TCTACTGCTGCAAATGCAACAAG 39765 || || ||||| ||||||||||| Sbjct 2280 TCAACAGCTGCGAATGCAACAAG 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686879855380440