Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 217 2e-51
seq481 104 3e-17
>seq2637
Length=17558
Score = 217 bits (240), Expect = 2e-51
Identities = 587/888 (66%), Gaps = 14/888 (2%)
Strand=Plus/Plus
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
|||||| || || || | ||| || |||||| ||| || || |||||||| || || ||
Sbjct 8085 GATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAA 8144
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470
|| | || || || | |||| |||| || || | ||||| ||| || ||
Sbjct 8145 TGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGAT 8204
Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCA 69525
|||||| || ||| ||| || || || || | ||| | |||| ||||| |||
Sbjct 8205 A---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCC--TCGAACTCA 8259
Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585
|| || | |||||| |||| ||||| || ||||| || ||||| | | |||| | |
Sbjct 8260 TCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCG 8319
Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCT 69644
| | || || || ||||| ||||||||||||||||| | || ||| |||||||| |
Sbjct 8320 TTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACA-AGGCATAGAAGAGATCGCG 8378
Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGA 69704
| | | ||| || || || || ||| || || || |||| | || ||| |
Sbjct 8379 AGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGC 8438
Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764
|||||||| || || || || || | | || || || || || || ||||| || |
Sbjct 8439 GTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAAC 8498
Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824
||||| |||||||| || |||||| || ||| |||| ||| || || || || || ||
Sbjct 8499 ATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTT 8558
Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCC 69884
|| |||| || || || | || ||||| | || |||||| || |||||
Sbjct 8559 GGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCC 8618
Query 69885 TGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATC 69944
|| | || || || | ||||| || | ||||| || || || || ||||||||
Sbjct 8619 CGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATC 8678
Query 69945 ATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAA 70004
|| |||||| | ||| || || ||| | ||| ||| || || || |||
Sbjct 8679 TTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAA 8738
Query 70005 TAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGC 70064
| ||| || ||||| |||||||| | || || | || |||||||| ||||||||
Sbjct 8739 GAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGC 8798
Query 70065 TGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123
| || |||||| ||| | || || || | ||| || ||||| | |||||| ||||| |
Sbjct 8799 AGCCTCGATATCCTCACCG-TGGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGC 8857
Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183
| || | | || || | | || |||||| || || || || || ||||
Sbjct 8858 GCTCAGCAATCTTGCCATCGAGACGGAGGAGATATGATCGCTCAAGGGTCTTGAATCCAA 8917
Query 70184 AATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231
|||| | ||| ||||| | ||||| | ||| |||| || ||||
Sbjct 8918 AATATTGGTAGTTGAAGTCACGATCGTAGACAATGGCAGAGTTGAGTT 8965
>seq481
Length=22500
Score = 104 bits (114), Expect = 3e-17
Identities = 290/443 (65%), Gaps = 4/443 (1%)
Strand=Plus/Plus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||||||||| |||||||| || |||||||| || || || || || | | || || ||
Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
|||||||| || || || || || | || || ||| | | || | | ||
Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACTTTCTCATTGCCAAGGGCGAGAAG 1981
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
| | ||| ||||| || || |||||| ||||||| | | ||||| || | ||
Sbjct 1982 GAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAAG 2041
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
| || |||||||| || | || |||| || || |||||||| || || |
Sbjct 2042 AGCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGAC 2101
Query 39565 CGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622
|| || || | | | || || | ||| || || ||| | | ||| |||
Sbjct 2102 --ATCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCATGCG 2159
Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682
||||| || || |||||||| | || | || || || || || || || | |
Sbjct 2160 AAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCC 2219
Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742
|| ||||||||||| || | |||||| |||| || || || || || |||||||| ||
Sbjct 2220 ATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACCC 2279
Query 39743 TCTACTGCTGCAAATGCAACAAG 39765
|| || ||||| |||||||||||
Sbjct 2280 TCAACAGCTGCGAATGCAACAAG 2302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686879855380440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |