Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1942 100 2e-16 >seq1942 Length=269065 Score = 100 bits (110), Expect = 2e-16 Identities = 266/405 (66%), Gaps = 11/405 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||| | | || ||||| ||| | | || |||| ||| ||||| || ||||| || Sbjct 64840 CCCAAAGTCATTAACGGTCCAGAAGTGCTGAACAAATTTGTTGGTCAGTCAGAAGAGAAC 64899 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA-AAAGTTC 19547 | || | || || ||||| || |||| | || | |||| | |||| Sbjct 64900 ATCAGAAAGCTCTTCGCCGACGCAGAGAAAGAGTACAAG-GAGAAGGGTGATGAAAGCGG 64958 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG--------- 19598 | | ||||| || || | || ||||| || || |||| ||||||||||| Sbjct 64959 TCTTCACATAATCATTTTCGACGAATTAGATGCTGTCTGCAAGCAAAGAGGCAGTGGAGC 65018 Query 19599 TTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 | ||||| || ||| || ||||| ||||||||| ||||| || || || | ||||| Sbjct 65019 TGGTGGTGGAACTGGTGTGGGTGACAGTGTTGTCAACCAACTGCTTTCCAAGCTCGACGG 65078 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 ||| ||||||| || || || || | ||||| ||||| ||| | |||| | || || Sbjct 65079 TGTGGACCAACTCAACAACATCTTGATGATTGGAATGACCAATCGTATGGACATGATCGA 65138 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || || || ||||| ||||| ||||| | | || || ||| |||| ||||| Sbjct 65139 TGATGCTTTGTTGCGACCTGGTCGTTTGGAGGTGCACATGGAGATTTCGCTACCAGATGA 65198 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCG 19823 | ||| | | ||||| | || || || || || | ||||| Sbjct 65199 AGCAGGAAGAGCACAAATTCTCAAGATTCACACTTCGAAGATGCG 65243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439670892855