Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1942 100 2e-16
>seq1942
Length=269065
Score = 100 bits (110), Expect = 2e-16
Identities = 266/405 (66%), Gaps = 11/405 (3%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|||||| | | || ||||| ||| | | || |||| ||| ||||| || ||||| ||
Sbjct 64840 CCCAAAGTCATTAACGGTCCAGAAGTGCTGAACAAATTTGTTGGTCAGTCAGAAGAGAAC 64899
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA-AAAGTTC 19547
| || | || || ||||| || |||| | || | |||| | ||||
Sbjct 64900 ATCAGAAAGCTCTTCGCCGACGCAGAGAAAGAGTACAAG-GAGAAGGGTGATGAAAGCGG 64958
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG--------- 19598
| | ||||| || || | || ||||| || || |||| |||||||||||
Sbjct 64959 TCTTCACATAATCATTTTCGACGAATTAGATGCTGTCTGCAAGCAAAGAGGCAGTGGAGC 65018
Query 19599 TTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
| ||||| || ||| || ||||| ||||||||| ||||| || || || | |||||
Sbjct 65019 TGGTGGTGGAACTGGTGTGGGTGACAGTGTTGTCAACCAACTGCTTTCCAAGCTCGACGG 65078
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718
||| ||||||| || || || || | ||||| ||||| ||| | |||| | || ||
Sbjct 65079 TGTGGACCAACTCAACAACATCTTGATGATTGGAATGACCAATCGTATGGACATGATCGA 65138
Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778
|| || || ||||| ||||| ||||| | | || || ||| |||| |||||
Sbjct 65139 TGATGCTTTGTTGCGACCTGGTCGTTTGGAGGTGCACATGGAGATTTCGCTACCAGATGA 65198
Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCG 19823
| ||| | | ||||| | || || || || || | |||||
Sbjct 65199 AGCAGGAAGAGCACAAATTCTCAAGATTCACACTTCGAAGATGCG 65243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397439670892855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |