Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq332 109 5e-19
>seq332
Length=18159
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | || | ||||| || | ||||| || ||||| || ||||||||| |
Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | || | || || || || || || || ||||||||||||| |||||||| ||
Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGA 2135
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| ||||| ||||| || | | | || | || |||| || ||||||
Sbjct 2136 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACT 2195
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||||| |||| ||||| || || || || || ||||| ||||||
Sbjct 2196 TCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 2243
Score = 100 bits (110), Expect = 2e-16
Identities = 164/235 (70%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073
|||||| || || || | || | ||||| || | ||||| || ||||| || |||||
Sbjct 1781 TTATTGACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTA 1840
Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133
||||||| | || | || || ||||| ||||| || | || || ||||| || ||
Sbjct 1841 ATCGCTCAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTC 1900
Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193
|| || | ||||| ||||| ||||| || | | | || | ||||| | ||
Sbjct 1901 AGGTGGGATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGA 1960
Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||||| | || |||| |||||||||| ||| || |||||||||||||||
Sbjct 1961 CTCGACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCATA 2015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424916941968552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |