Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 217 2e-51
seq481 129 7e-25
seq1553 82.4 1e-10
seq274 82.4 1e-10
>seq2637
Length=17558
Score = 217 bits (240), Expect = 2e-51
Identities = 1173/1834 (64%), Gaps = 73/1834 (4%)
Strand=Plus/Plus
Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413
||| ||| ||||| |||||||| || ||||| | ||| ||||| | | |||
Sbjct 7123 GCCATTGTACGGAGGTAGTACATGCCAGTCTTCAATCCCAACTTCCAGCCAGCGAAGTGC 7182
Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTT 110471
|| | || |||| ||| |||||| | |||| || |||||| ||| || ||
Sbjct 7183 ATGCTGGTGATCTTGCCCATGGTTGGATCCTTCATGTGGATGTTCATCGACTGGGA--TT 7240
Query 110472 GGTCAATGAA-GCGCCCCCGTTGTGCCGCCATATCAATGACA--TCCTTCATCTTAATTT 110528
| || ||| | ||||| | || | || ||||| | || | | || || | || |
Sbjct 7241 GATCGATGTATGCGCCACGGTCG-GCTGCCATCTGAACAATAGTTCGTTGAGAG--ATCT 7297
Query 110529 CCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGG 110588
||||||| || || ||| ||||||||| ||||||| | || || ||||||||||
Sbjct 7298 CCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATGTTTGGAATGTTCTGGATGG 7357
Query 110589 AACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGA 110648
||||||| | | ||| | | |||||| | | |||||||| || || | |
Sbjct 7358 AACCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAGAGGCCCATATCTACCA 7417
Query 110649 GGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGT 110708
||| || | | |||||| | ||||| || || || | | ||
Sbjct 7418 AGTCCTTCAACAACCAAGGGTTGACGACCTGGAACTCGCCAGCAAGCACACGGCGAGAGT 7477
Query 110709 AGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAG 110767
| ||||| | |||||||| |||||||| || || | |||||| | || |||| |
Sbjct 7478 AAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTG 7536
Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827
|| |||||||| || || | | | |||||| || | ||| | | |||||| ||| |
Sbjct 7537 GCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTGC 7596
Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAA 110885
|| | ||||||||| || || | | || | | |||| | |||| | ||||
Sbjct 7597 TTCAAGCTATCCCAGTCCCAGA-GATCGGTGGGGGTGATGC-CCCATAGGTCATATTGAA 7654
Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGG-CTTC---A 110941
|| | || | || || ||||| |||||| | || ||||| | ||| | | ||| |
Sbjct 7655 GCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAA 7714
Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001
|| | || ||| || | | | ||||| || ||||| || ||||| | ||
Sbjct 7715 GCTCAATCGAAGCGG---TCAAAGCA-GCGTGGTAGATGGTCTCGAAGATTTGGATGTTG 7770
Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCG 111056
| | |||||| ||| ||| || |||| || || | || ||| |||| |
Sbjct 7771 AGGTGCTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAG-----CATCTG 7825
Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGT 111114
| |||||||||||||| | |||| |||| ||| || | || ||| || |||
Sbjct 7826 CAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTG--CTTCGTCTCGC--- 7880
Query 111115 CTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171
||| ||| || || | || | || |||| | ||||| || ||| ||| | |||
Sbjct 7881 CTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAACGA-CTT 7939
Query 111172 TGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTT 111228
| || || || || || || | || | |||| || | ||||| ||||| |
Sbjct 7940 GGCAGACCTCGTGGAGCTTGGCAAAGTCGTATGTGCC-GT-TGTTCATGTCAACATAAGT 7997
Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288
|| || || | || ||||| ||||| ||||| |||| || | |||||| |
Sbjct 7998 CGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCAC 8057
Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348
|||||| || || ||||| || || || || || | ||||| ||||| |||||
Sbjct 8058 AATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCG 8117
Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408
|||||| |||||||||||||||||| | || | || ||||| || || | | ||| ||
Sbjct 8118 GTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGAT 8177
Query 111409 AGCCTTCCAAA-CATCGGCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTA 111465
| | ||||| | | | | || | || | ||| ||| | |||||| ||||||
Sbjct 8178 GGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGA---CCCTTGCCCTCCTTCTCGTA 8234
Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525
||| ||| || || || ||||| ||||| | || | | || || || |
Sbjct 8235 CTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATT 8294
Query 111526 TGGACAGAAAAGAGACCATT-GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584
|| || | ||||| ||| | | | |||| || || ||||||||||| || || ||||
Sbjct 8295 GGGGCACATAAGAGTCCACTCGGCGTTCTTC-TCGACACGCTTCATGAATAGATCGGGAA 8353
Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644
|||||| || | |||||||| | | ||| | || || | || ||||| ||| |
Sbjct 8354 TCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCA 8413
Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704
|||||| |||| | | ||| |||||||||||||| || |||| |||| || ||
Sbjct 8414 GGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACC-- 8471
Query 111705 TTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758
| | ||| ||| | || | ||||| | || ||| ||| || || || | ||
Sbjct 8472 -TGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACA 8530
Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818
| |||| ||| || | || | || || || || || | | |||| | |
Sbjct 8531 TGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAA 8590
Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878
||||||| | |||||||| || || ||| || || ||||| || | |
Sbjct 8591 TTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGA 8650
Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938
| || | ||||| |||| || || ||||| || ||| ||||||||| || |
Sbjct 8651 GGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAA 8710
Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998
||| | ||| |||||||| ||||| || |||| ||| ||| |||| ||| ||
Sbjct 8711 GCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAG-TAC-TT 8768
Query 111999 GG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056
| |||||| || ||||||||| | ||| || || || || ||||||||||| |
Sbjct 8769 GCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAAC 8828
Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 112116
|| || ||||| | ||| | || ||| || | |||||||||| || | ||
Sbjct 8829 CGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACGGAGGAG 8888
Query 112117 ATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
||| | || ||||||||| |||| ||||| ||
Sbjct 8889 ATATGATC-GCTCAAGGGTCTTGAATCCAAAATA 8921
>seq481
Length=22500
Score = 129 bits (142), Expect = 7e-25
Identities = 162/217 (75%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| ||||||||||| ||||| || || ||||| ||||| || || | ||| |||||
Sbjct 2168 GTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACC 2227
Query 122730 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788
||||||||||||||| | || | ||| |||||| |||||||||||||||||||| |||
Sbjct 2228 ACGCTTCTTCAACCAAAAGATGGACGC-GAATGAACCGGAGAAGAAGATACCCTCAACAG 2286
Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTCA 122845
|| || |||| ||| |||| || |||| ||||| ||| | | || |||| | |
Sbjct 2287 CTGCGAATGCAACAAGACGTTGAGCAAAGG---TAGACTTCTTGTCTTGAATCCATCTGA 2343
Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882
||||| | |||||||||| || || || || ||
Sbjct 2344 CAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380
>seq1553
Length=189915
Score = 82.4 bits (90), Expect = 1e-10
Identities = 215/321 (67%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGAT 11679
||||| | || || || ||||| ||||| | |||||||| || | ||| | || ||
Sbjct 20993 TTGCCGATAGCGTCGATTTCATCGATGAAAATTATACATGGCGTGCTCTTC-CTCGCCAT 21051
Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739
| || ||||| || || ||| ||||| |||||||| ||||||||||| || | |
Sbjct 21052 GGCGAAAAGATCTCGCACTCTTGATGCACCGACACCAACGAACATCTCCACGAACTCGGA 21111
Query 11740 GGCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798
|| | |||| || ||| || || | || || || || | || || | ||| |
Sbjct 21112 ACCACTGACACT-GAAGAAAGGTACTTGCGACTCGCCAGCAGTTGCCTTTGCTAAGAGAG 21170
Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856
|||| || |||||||| ||| | || | || |||||||| ||||||||||| ||
Sbjct 21171 TCTTACCTGTACCTGGTGGACCAGAAAGGATAGCTCCTCGGGGAATCTTGGCACCTAACC 21230
Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916
| || |||| | ||| || ||||| | |||| ||| || ||| | |||||
Sbjct 21231 GCTGGAACTTCTCGGGAGTT--TTCAGAAATTGGACAAACTCCATAATTTCCGCCTTGGC 21288
Query 11917 CGCGTCAATCCCCTCAACATC 11937
|||| || || | |||||
Sbjct 21289 TTCGTCCATACCAGCCACATC 21309
>seq274
Length=77263
Score = 82.4 bits (90), Expect = 1e-10
Identities = 171/252 (68%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664
|||| || | || || || |||||||| || ||||| ||| | ||||| |
Sbjct 24593 ATGGGCGCATCGCCCCGCGCTCCGGTCTAGCATCCAAGCACATGATTGACACCGGTGCTG 24652
Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724
| || ||||| | || ||| || | ||||| ||| | || ||||||||||| || |
Sbjct 24653 GAGTCATTGACGCTGATTATCGCGGCCAGGTCAAGGTCCTGCTTTTCAATCACGGTGAAA 24712
Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 164784
| |||||||| || ||| | || ||| | |||||||| | || || ||| | | | |
Sbjct 24713 AGGACTTTGAAGTTAAGGAGGGAGATAGAGTCGCACAATTGGTGCTCGAGAGGATTTATA 24772
Query 164785 CACCCGATGTGGAGGAAATTGGTGTTCTT-GAAGAGACGGAGAGAGGTGCGGGTGGATTT 164843
| ||||| ||| ||| | ||| | ||| || |||| | || || | |||||| |||
Sbjct 24773 CGCCCGAGGTGAAGG-AGGTGGAGGCCTTGGAGGAGAGTGTTAGGGGAGAGGGTGGTTTT 24831
Query 164844 GGATCTACTGGT 164855
|| |||||||
Sbjct 24832 GGGAGTACTGGT 24843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628005536301600
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