Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2637 217 2e-51 seq481 129 7e-25 seq1553 82.4 1e-10 seq274 82.4 1e-10 >seq2637 Length=17558 Score = 217 bits (240), Expect = 2e-51 Identities = 1173/1834 (64%), Gaps = 73/1834 (4%) Strand=Plus/Plus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| ||| ||||| |||||||| || ||||| | ||| ||||| | | ||| Sbjct 7123 GCCATTGTACGGAGGTAGTACATGCCAGTCTTCAATCCCAACTTCCAGCCAGCGAAGTGC 7182 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTT 110471 || | || |||| ||| |||||| | |||| || |||||| ||| || || Sbjct 7183 ATGCTGGTGATCTTGCCCATGGTTGGATCCTTCATGTGGATGTTCATCGACTGGGA--TT 7240 Query 110472 GGTCAATGAA-GCGCCCCCGTTGTGCCGCCATATCAATGACA--TCCTTCATCTTAATTT 110528 | || ||| | ||||| | || | || ||||| | || | | || || | || | Sbjct 7241 GATCGATGTATGCGCCACGGTCG-GCTGCCATCTGAACAATAGTTCGTTGAGAG--ATCT 7297 Query 110529 CCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGG 110588 ||||||| || || ||| ||||||||| ||||||| | || || |||||||||| Sbjct 7298 CCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATGTTTGGAATGTTCTGGATGG 7357 Query 110589 AACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGA 110648 ||||||| | | ||| | | |||||| | | |||||||| || || | | Sbjct 7358 AACCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAGAGGCCCATATCTACCA 7417 Query 110649 GGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGT 110708 ||| || | | |||||| | ||||| || || || | | || Sbjct 7418 AGTCCTTCAACAACCAAGGGTTGACGACCTGGAACTCGCCAGCAAGCACACGGCGAGAGT 7477 Query 110709 AGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAG 110767 | ||||| | |||||||| |||||||| || || | |||||| | || |||| | Sbjct 7478 AAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTG 7536 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || |||||||| || || | | | |||||| || | ||| | | |||||| ||| | Sbjct 7537 GCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTGC 7596 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 || | ||||||||| || || | | || | | |||| | |||| | |||| Sbjct 7597 TTCAAGCTATCCCAGTCCCAGA-GATCGGTGGGGGTGATGC-CCCATAGGTCATATTGAA 7654 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGG-CTTC---A 110941 || | || | || || ||||| |||||| | || ||||| | ||| | | ||| | Sbjct 7655 GCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAA 7714 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 || | || ||| || | | | ||||| || ||||| || ||||| | || Sbjct 7715 GCTCAATCGAAGCGG---TCAAAGCA-GCGTGGTAGATGGTCTCGAAGATTTGGATGTTG 7770 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCG 111056 | | |||||| ||| ||| || |||| || || | || ||| |||| | Sbjct 7771 AGGTGCTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAG-----CATCTG 7825 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGT 111114 | |||||||||||||| | |||| |||| ||| || | || ||| || ||| Sbjct 7826 CAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTG--CTTCGTCTCGC--- 7880 Query 111115 CTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 ||| ||| || || | || | || |||| | ||||| || ||| ||| | ||| Sbjct 7881 CTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAACGA-CTT 7939 Query 111172 TGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTT 111228 | || || || || || || | || | |||| || | ||||| ||||| | Sbjct 7940 GGCAGACCTCGTGGAGCTTGGCAAAGTCGTATGTGCC-GT-TGTTCATGTCAACATAAGT 7997 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || || || | || ||||| ||||| ||||| |||| || | |||||| | Sbjct 7998 CGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCAC 8057 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 |||||| || || ||||| || || || || || | ||||| ||||| ||||| Sbjct 8058 AATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCG 8117 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 |||||| |||||||||||||||||| | || | || ||||| || || | | ||| || Sbjct 8118 GTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGAT 8177 Query 111409 AGCCTTCCAAA-CATCGGCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTA 111465 | | ||||| | | | | || | || | ||| ||| | |||||| |||||| Sbjct 8178 GGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGA---CCCTTGCCCTCCTTCTCGTA 8234 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 ||| ||| || || || ||||| ||||| | || | | || || || | Sbjct 8235 CTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATT 8294 Query 111526 TGGACAGAAAAGAGACCATT-GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 || || | ||||| ||| | | | |||| || || ||||||||||| || || |||| Sbjct 8295 GGGGCACATAAGAGTCCACTCGGCGTTCTTC-TCGACACGCTTCATGAATAGATCGGGAA 8353 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 |||||| || | |||||||| | | ||| | || || | || ||||| ||| | Sbjct 8354 TCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCA 8413 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 |||||| |||| | | ||| |||||||||||||| || |||| |||| || || Sbjct 8414 GGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACC-- 8471 Query 111705 TTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 | | ||| ||| | || | ||||| | || ||| ||| || || || | || Sbjct 8472 -TGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACA 8530 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818 | |||| ||| || | || | || || || || || | | |||| | | Sbjct 8531 TGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAA 8590 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 ||||||| | |||||||| || || ||| || || ||||| || | | Sbjct 8591 TTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGA 8650 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | ||||| |||| || || ||||| || ||| ||||||||| || | Sbjct 8651 GGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAA 8710 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 ||| | ||| |||||||| ||||| || |||| ||| ||| |||| ||| || Sbjct 8711 GCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAG-TAC-TT 8768 Query 111999 GG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | |||||| || ||||||||| | ||| || || || || ||||||||||| | Sbjct 8769 GCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAAC 8828 Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 112116 || || ||||| | ||| | || ||| || | |||||||||| || | || Sbjct 8829 CGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACGGAGGAG 8888 Query 112117 ATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| | || ||||||||| |||| ||||| || Sbjct 8889 ATATGATC-GCTCAAGGGTCTTGAATCCAAAATA 8921 >seq481 Length=22500 Score = 129 bits (142), Expect = 7e-25 Identities = 162/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||||||||| ||||| || || ||||| ||||| || || | ||| ||||| Sbjct 2168 GTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACC 2227 Query 122730 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 ||||||||||||||| | || | ||| |||||| |||||||||||||||||||| ||| Sbjct 2228 ACGCTTCTTCAACCAAAAGATGGACGC-GAATGAACCGGAGAAGAAGATACCCTCAACAG 2286 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTCA 122845 || || |||| ||| |||| || |||| ||||| ||| | | || |||| | | Sbjct 2287 CTGCGAATGCAACAAGACGTTGAGCAAAGG---TAGACTTCTTGTCTTGAATCCATCTGA 2343 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 ||||| | |||||||||| || || || || || Sbjct 2344 CAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380 >seq1553 Length=189915 Score = 82.4 bits (90), Expect = 1e-10 Identities = 215/321 (67%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGAT 11679 ||||| | || || || ||||| ||||| | |||||||| || | ||| | || || Sbjct 20993 TTGCCGATAGCGTCGATTTCATCGATGAAAATTATACATGGCGTGCTCTTC-CTCGCCAT 21051 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | || ||||| || || ||| ||||| |||||||| ||||||||||| || | | Sbjct 21052 GGCGAAAAGATCTCGCACTCTTGATGCACCGACACCAACGAACATCTCCACGAACTCGGA 21111 Query 11740 GGCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 || | |||| || ||| || || | || || || || | || || | ||| | Sbjct 21112 ACCACTGACACT-GAAGAAAGGTACTTGCGACTCGCCAGCAGTTGCCTTTGCTAAGAGAG 21170 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856 |||| || |||||||| ||| | || | || |||||||| ||||||||||| || Sbjct 21171 TCTTACCTGTACCTGGTGGACCAGAAAGGATAGCTCCTCGGGGAATCTTGGCACCTAACC 21230 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | || |||| | ||| || ||||| | |||| ||| || ||| | ||||| Sbjct 21231 GCTGGAACTTCTCGGGAGTT--TTCAGAAATTGGACAAACTCCATAATTTCCGCCTTGGC 21288 Query 11917 CGCGTCAATCCCCTCAACATC 11937 |||| || || | ||||| Sbjct 21289 TTCGTCCATACCAGCCACATC 21309 >seq274 Length=77263 Score = 82.4 bits (90), Expect = 1e-10 Identities = 171/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || | || || || |||||||| || ||||| ||| | ||||| | Sbjct 24593 ATGGGCGCATCGCCCCGCGCTCCGGTCTAGCATCCAAGCACATGATTGACACCGGTGCTG 24652 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 | || ||||| | || ||| || | ||||| ||| | || ||||||||||| || | Sbjct 24653 GAGTCATTGACGCTGATTATCGCGGCCAGGTCAAGGTCCTGCTTTTCAATCACGGTGAAA 24712 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 164784 | |||||||| || ||| | || ||| | |||||||| | || || ||| | | | | Sbjct 24713 AGGACTTTGAAGTTAAGGAGGGAGATAGAGTCGCACAATTGGTGCTCGAGAGGATTTATA 24772 Query 164785 CACCCGATGTGGAGGAAATTGGTGTTCTT-GAAGAGACGGAGAGAGGTGCGGGTGGATTT 164843 | ||||| ||| ||| | ||| | ||| || |||| | || || | |||||| ||| Sbjct 24773 CGCCCGAGGTGAAGG-AGGTGGAGGCCTTGGAGGAGAGTGTTAGGGGAGAGGGTGGTTTT 24831 Query 164844 GGATCTACTGGT 164855 || ||||||| Sbjct 24832 GGGAGTACTGGT 24843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628005536301600