Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 170 2e-37
seq481 120 4e-22
>seq2637
Length=17558
Score = 170 bits (188), Expect = 2e-37
Identities = 1122/1763 (64%), Gaps = 63/1763 (4%)
Strand=Plus/Plus
Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887
||| ||| |||||||||||||| || ||||| | ||| ||||||| || | |||
Sbjct 7123 GCCATTGTACGGAGGTAGTACATGCCAGTCTTCAATCCCAACTTCCAGCCAGCGAAGTGC 7182
Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947
|| || | |||| | ||||||| | |||| || |||||| |||||||||
Sbjct 7183 ATGCTGGTGATCTTGCCCATGGTTGGATCCTTCATGTGGATGTTCATCGACTGGGATTGA 7242
Query 117948 TCGATGAA-GCGTCCCCGATCCGCCGCCATATCAATCACA--TCCTTCATCTTGATTTCC 118004
|||||| | ||| || || || || ||||| | || | | || || | ||| |||
Sbjct 7243 TCGATGTATGCG-CCACGGTCGGCTGCCATCTGAACAATAGTTCGTTGAGA--GATCTCC 7299
Query 118005 CACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAT 118064
|| || ||| |||| || || |||||| ||||||| | || || ||||||||
Sbjct 7300 CAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATGTTTGGAATGTTCTGGATGGAA 7359
Query 118065 CCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGA 118124
|| || | || ||| | | |||||| | | |||||||| || || | | |
Sbjct 7360 CCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAGAGGCCCATATCTACCAAG 7419
Query 118125 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TA 118183
|||| || | ||||| || ||||| || || || || | ||| ||
Sbjct 7420 TCCTTCAACAACCAAGGGTTGACGACCTGGAACTCGCCAGCAAGCACACGGCG-AGAGTA 7478
Query 118184 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGG 118242
|| |||| |||||||||||||||||||| ||| | |||||| | | ||| || ||
Sbjct 7479 AATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGG 7537
Query 118243 CTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCT 118302
| || ||||| || || | || | ||||| |||| ||| | || | | || ||| ||
Sbjct 7538 CAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTGCT 7597
Query 118303 TGAGAGCG-TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATA--TCAAACTGGA 118359
| | ||| |||||||| || || | || |||| |||| ||| | || |
Sbjct 7598 TCA-AGCTATCCCAGTCCCAGA-GATCGGTGGGGGTGA-TGCCCCATAGGTCATATTGAA 7654
Query 118360 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 118419
| ||| | || || || || |||||| |||||||||| || || || | || || |
Sbjct 7655 GCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAA 7714
Query 118420 ----ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475
| ||| ||| | | || ||||| || || || || || || | ||
Sbjct 7715 GCTCAATCGAAGCGGTC----AAAGCAGCGTGGTAGATGGTCTCGAAGATTTGGATGTTG 7770
Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535
| ||||||||| || || || | || ||| | || |||| || |||
Sbjct 7771 AGGTGCTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAGCATCTGCAAGA 7830
Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC--- 118592
||||| ||||| | | |||| || || || | | || |||| || |||
Sbjct 7831 CCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTG--CTTCGTCTCGC-CTCGGGA 7887
Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC--CTTTGT-G 118649
|| || || | || ||||||| | | |||| || ||| ||||| ||| | |
Sbjct 7888 ACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTG---ACAACGACTTGGCAG 7944
Query 118650 ATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG--ACATACTTAGGAA 118707
| || || ||||| | | || | ||| || | ||||| ||||| | || |
Sbjct 7945 ACCTCGTGGAGCTTGGCAAAGTCGTATGTGCC-GT-TGTTCATGTCAACATAAGTCGGGA 8002
Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767
| || | || |||| || || |||| |||| || || |||||| | |||||
Sbjct 8003 GCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTT 8062
Query 118768 CCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827
| ||||||||||| || || || || || | |||||| || || |||| ||| |
Sbjct 8063 CAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGC 8122
Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887
| ||||||||||| |||||| |||| | || ||||| ||||| | || ||| || | |
Sbjct 8123 ATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGT 8182
Query 118888 TCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945
||| | | ||| || | | ||| || | ||||| | |||||||||
Sbjct 8183 ACCAAAGCTTTTGAGCCTTGATAGTCTTGCG-ACCCTTG-CCCTCCTTCTCGTACTTCTC 8240
Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCA 119005
||| || || || ||||| ||||| | | || | | || || || || |||||
Sbjct 8241 GTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCA 8300
Query 119006 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 119065
| |||| ||| | | || ||| || ||||||||||| || || || ||||| |
Sbjct 8301 CATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAA 8360
Query 119066 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125
|| |||||||||| ||| ||| |||| || | || || || |||| || |
Sbjct 8361 GGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAG 8420
Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG 119185
| || | | ||| |||||||| || || ||||| | |||| | | ||| | ||
Sbjct 8421 GTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAG-CACCT--GGGCG 8477
Query 119186 ------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239
||| |||||| ||||| || |||||| ||| || || || | ||| ||||
Sbjct 8478 CTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAAC 8537
Query 119240 GATACCATCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGACATC-G 119297
|| || | ||| | || || || || ||| | || | |||| | || || |
Sbjct 8538 AATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCAC-CAGTGGCAC-GAATTCTG 8595
Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357
||||||| | ||||||||| || || ||| || || || || || |||| ||
Sbjct 8596 TGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTG 8655
Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417
||||||| || || || || |||| | ||| |||||||| || | |||
Sbjct 8656 TCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGA 8715
Query 119418 GGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--G 119474
||||| || ||||||||| ||||| || |||| || || |||| || ||||
Sbjct 8716 -GCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAA-GTA-CTTGCTT 8772
Query 119475 GACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 119534
|||||| || ||| ||||| | | || || || || ||||| || || | ||
Sbjct 8773 GACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCC 8832
Query 119535 ACCCGCATAAACATGTATTGGGG 119557
|| ||||||| ||| | ||| ||
Sbjct 8833 ACGCGCATAATCATATGTTGAGG 8855
>seq481
Length=22500
Score = 120 bits (132), Expect = 4e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| |||||||| |||||||||||||| ||||| ||||| || || | ||| |||||
Sbjct 2168 GTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACC 2227
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||||||||||| || || | ||||| || ||||||||||| ||||| |||
Sbjct 2228 ACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACCCTCAACAGC 2287
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
||||| |||| ||||| | ||||||||
Sbjct 2288 TGCGAATGCAACAAGACGTTGAGCAAAGG 2316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618409140686760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |