Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2637 170 2e-37 seq481 120 4e-22 >seq2637 Length=17558 Score = 170 bits (188), Expect = 2e-37 Identities = 1122/1763 (64%), Gaps = 63/1763 (4%) Strand=Plus/Plus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||| ||| |||||||||||||| || ||||| | ||| ||||||| || | ||| Sbjct 7123 GCCATTGTACGGAGGTAGTACATGCCAGTCTTCAATCCCAACTTCCAGCCAGCGAAGTGC 7182 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 || || | |||| | ||||||| | |||| || |||||| ||||||||| Sbjct 7183 ATGCTGGTGATCTTGCCCATGGTTGGATCCTTCATGTGGATGTTCATCGACTGGGATTGA 7242 Query 117948 TCGATGAA-GCGTCCCCGATCCGCCGCCATATCAATCACA--TCCTTCATCTTGATTTCC 118004 |||||| | ||| || || || || ||||| | || | | || || | ||| ||| Sbjct 7243 TCGATGTATGCG-CCACGGTCGGCTGCCATCTGAACAATAGTTCGTTGAGA--GATCTCC 7299 Query 118005 CACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAT 118064 || || ||| |||| || || |||||| ||||||| | || || |||||||| Sbjct 7300 CAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATGTTTGGAATGTTCTGGATGGAA 7359 Query 118065 CCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGA 118124 || || | || ||| | | |||||| | | |||||||| || || | | | Sbjct 7360 CCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAGAGGCCCATATCTACCAAG 7419 Query 118125 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TA 118183 |||| || | ||||| || ||||| || || || || | ||| || Sbjct 7420 TCCTTCAACAACCAAGGGTTGACGACCTGGAACTCGCCAGCAAGCACACGGCG-AGAGTA 7478 Query 118184 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGG 118242 || |||| |||||||||||||||||||| ||| | |||||| | | ||| || || Sbjct 7479 AATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGG 7537 Query 118243 CTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCT 118302 | || ||||| || || | || | ||||| |||| ||| | || | | || ||| || Sbjct 7538 CAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTGCT 7597 Query 118303 TGAGAGCG-TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATA--TCAAACTGGA 118359 | | ||| |||||||| || || | || |||| |||| ||| | || | Sbjct 7598 TCA-AGCTATCCCAGTCCCAGA-GATCGGTGGGGGTGA-TGCCCCATAGGTCATATTGAA 7654 Query 118360 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 118419 | ||| | || || || || |||||| |||||||||| || || || | || || | Sbjct 7655 GCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAA 7714 Query 118420 ----ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 | ||| ||| | | || ||||| || || || || || || | || Sbjct 7715 GCTCAATCGAAGCGGTC----AAAGCAGCGTGGTAGATGGTCTCGAAGATTTGGATGTTG 7770 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535 | ||||||||| || || || | || ||| | || |||| || ||| Sbjct 7771 AGGTGCTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAGCATCTGCAAGA 7830 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC--- 118592 ||||| ||||| | | |||| || || || | | || |||| || ||| Sbjct 7831 CCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTG--CTTCGTCTCGC-CTCGGGA 7887 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC--CTTTGT-G 118649 || || || | || ||||||| | | |||| || ||| ||||| ||| | | Sbjct 7888 ACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTG---ACAACGACTTGGCAG 7944 Query 118650 ATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG--ACATACTTAGGAA 118707 | || || ||||| | | || | ||| || | ||||| ||||| | || | Sbjct 7945 ACCTCGTGGAGCTTGGCAAAGTCGTATGTGCC-GT-TGTTCATGTCAACATAAGTCGGGA 8002 Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767 | || | || |||| || || |||| |||| || || |||||| | ||||| Sbjct 8003 GCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTT 8062 Query 118768 CCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827 | ||||||||||| || || || || || | |||||| || || |||| ||| | Sbjct 8063 CAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGC 8122 Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887 | ||||||||||| |||||| |||| | || ||||| ||||| | || ||| || | | Sbjct 8123 ATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGT 8182 Query 118888 TCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 ||| | | ||| || | | ||| || | ||||| | ||||||||| Sbjct 8183 ACCAAAGCTTTTGAGCCTTGATAGTCTTGCG-ACCCTTG-CCCTCCTTCTCGTACTTCTC 8240 Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCA 119005 ||| || || || ||||| ||||| | | || | | || || || || ||||| Sbjct 8241 GTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCA 8300 Query 119006 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 119065 | |||| ||| | | || ||| || ||||||||||| || || || ||||| | Sbjct 8301 CATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAA 8360 Query 119066 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || |||||||||| ||| ||| |||| || | || || || |||| || | Sbjct 8361 GGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAG 8420 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG 119185 | || | | ||| |||||||| || || ||||| | |||| | | ||| | || Sbjct 8421 GTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAG-CACCT--GGGCG 8477 Query 119186 ------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 ||| |||||| ||||| || |||||| ||| || || || | ||| |||| Sbjct 8478 CTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAAC 8537 Query 119240 GATACCATCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGACATC-G 119297 || || | ||| | || || || || ||| | || | |||| | || || | Sbjct 8538 AATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCAC-CAGTGGCAC-GAATTCTG 8595 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 ||||||| | ||||||||| || || ||| || || || || || |||| || Sbjct 8596 TGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTG 8655 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 ||||||| || || || || |||| | ||| |||||||| || | ||| Sbjct 8656 TCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGA 8715 Query 119418 GGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--G 119474 ||||| || ||||||||| ||||| || |||| || || |||| || |||| Sbjct 8716 -GCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAA-GTA-CTTGCTT 8772 Query 119475 GACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 119534 |||||| || ||| ||||| | | || || || || ||||| || || | || Sbjct 8773 GACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCC 8832 Query 119535 ACCCGCATAAACATGTATTGGGG 119557 || ||||||| ||| | ||| || Sbjct 8833 ACGCGCATAATCATATGTTGAGG 8855 >seq481 Length=22500 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||| |||||||||||||| ||||| ||||| || || | ||| ||||| Sbjct 2168 GTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACC 2227 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||||||| || || | ||||| || ||||||||||| ||||| ||| Sbjct 2228 ACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACCCTCAACAGC 2287 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| |||| ||||| | |||||||| Sbjct 2288 TGCGAATGCAACAAGACGTTGAGCAAAGG 2316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618409140686760