Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2637 244 1e-59 seq481 123 3e-23 >seq2637 Length=17558 Score = 244 bits (270), Expect = 1e-59 Identities = 1175/1822 (64%), Gaps = 67/1822 (4%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTC-TTGA 104213 |||||||| |||| ||||||||| || | ||||| | || |||||||| ||| Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATTGC 8863 Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 || | ||| || | ||| | ||||||||||| | || || || || || || || | Sbjct 8862 TG-AGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCG 8804 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 104331 | ||| | ||||||||| || |||||| |||| || |||| ||| ||| |||| Sbjct 8803 AGGCTGCTATTGAGACATACAACTTGATGTCAAGCAAG-TAC-TTCACTCATGCATCACC 8746 Query 104332 AACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAA 104391 || ||||| |||||||| ||| | || | || ||||||||| ||| || Sbjct 8745 CACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACAT 8686 Query 104392 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 104451 ||||| || || |||| ||||| | || || | || ||||| || || || Sbjct 8685 GAAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAA 8626 Query 104452 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 104511 | || || |||||||| | ||||||| | | |||| | | || Sbjct 8625 GAATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGC 8566 Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 || || || || | || | || ||| |||| ||| | || || || ||| ||| || Sbjct 8565 TGGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGC 8506 Query 104572 GCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGA 104625 | ||||| | || | ||| ||| | | || || |||| |||| || || Sbjct 8505 TAGATATGTTGACCAGGGTGGCAACAAGCGCCCA---GGTGCTTTCGCTATCTACCTCGA 8449 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 |||||||||||| ||| | | |||| |||||| |||| ||||| || | ||||| Sbjct 8448 GCCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGA 8389 Query 104686 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | || ||| ||||||||||||| || | |||||||| ||||| ||||||||| | | Sbjct 8388 AGTTCG-TGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTG 8330 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 | ||| ||| | | | ||| |||| | || || | || ||||| | | |||| Sbjct 8329 TCGAGAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATG 8270 Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864 | ||||| ||||| || || || ||| |||||||| |||| ||| | | | | | Sbjct 8269 TCTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGA-GAAGGAGGGCAAGGGTC-G 8212 Query 104865 C--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 104922 | ||| | ||| | | ||| | | || ||| || ||||||||||||| || Sbjct 8211 CAAGACTATCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGG 8152 Query 104923 TACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 104982 | |||| |||||| ||||| || || || |||| |||||| || || ||||| | || Sbjct 8151 AAACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGG 8092 Query 104983 TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 105042 | ||| || || || | || || ||||| |||| | | ||| |||| Sbjct 8091 TACTATCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGAT 8032 Query 105043 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-- 105100 ||||| || ||| | || || | || ||||| | ||||| || || |||| | Sbjct 8031 TGCTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGA--CATGAACAACGGC 7974 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGT-TACGAAAACTGTCACCAAAAACCTAAACAG 105159 |||| || | || || |||||||| || | | || | || ||| ||| |||||| Sbjct 7973 ACATACGACTTTGCCAAGCTCCACGAGGTCTGCCAAGTC-GTTGTCAAGAACTTAAACAA 7915 Query 105160 AGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACA 105216 | | || |||| || | ||||| ||| ||| | || || | || | | || Sbjct 7914 AATCATCGATATCAACTACTACCCAGTTCCCGAGGCGAGACG--AAGC-AACTTTCGTCA 7858 Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCA 105273 ||| || |||| | |||||||| ||||| || |||| ||| | || ||| | Sbjct 7857 CCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCTTC- 7799 Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 |||| || || || || ||| | |||| | || || |||||||| || || Sbjct 7798 --CATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTACCA 7741 Query 105334 CGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391 ||| ||| |||| || | | ||| | || || | |||||||| ||||| || | | Sbjct 7740 CGCTGCT-TTGA-CCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACATAT 7683 Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGACCA 105449 ||||| ||||| || || | || | |||||||| ||| |||| || | | | || Sbjct 7682 GAGGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCA---TCACCCCC 7626 Query 105450 AGC-TTCACTACGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507 | | || || |||||||| |||| | ||| ||| |||||| | | ||| | || || Sbjct 7625 ACCGATCTCTGGGACTGGGATAGCT-TGAAGCAACAGATCAAGCAACATGGTATCCGCAA 7567 Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACA-AATCTTGGGTAATAATG 105566 |||| | || | ||||| |||||||| ||| |||| || | |||||| | || | Sbjct 7566 CAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCT-TCAACG 7508 Query 105567 AATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 | |||||||| || ||||| | ||||| || ||| | | || || || ||||| Sbjct 7507 AGTGCTTTGAGCCATACACTTCCAACATTTACTCT-CGCCGTGTGCTTGCTGGCGAGTTC 7449 Query 105626 GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGAT 105685 | | |||||| | || | ||| | ||| || || |||||||| | | Sbjct 7448 CAGGTCGTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGACAAC 7389 Query 105686 ATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAAT 105745 |||||| | | ||| | | || |||||||| || || ||| | || ||| | Sbjct 7388 ATGAAGAACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCAGCT 7329 Query 105746 GAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA--TGTCATTGACA 105803 || || || ||||| || |||||||| ||| | || || | | || | | Sbjct 7328 GATATCAAAGCTCTGTACAAGACCGTTTGGGAGATC--TCTCAACGAACTATTGTTCAGA 7271 Query 105804 TGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGG 105860 |||| || || ||||| ||| | ||| |||||| || ||| ||||| || |||| Sbjct 7270 TGGCAGCCGACCGTGG-CGCATACATCGATCAA--TCCCAGTCGATGAACATCCACATGA 7214 Query 105861 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCA 105920 | |||||| ||| |||| || | |||||| | | |||||| ||| | | Sbjct 7213 AGGATCCAACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGATTGA 7154 Query 105921 AAACGGGGATGTATTACCTCCG 105942 | || || ||||| |||||||| Sbjct 7153 AGACTGGCATGTACTACCTCCG 7132 >seq481 Length=22500 Score = 123 bits (136), Expect = 3e-23 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AG 94788 |||||||| || || | ||||| || || |||||| | | ||| || | |||| || Sbjct 2380 ACAGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAG 2321 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || | |||||||| | || || | ||||| || ||||||||||||||||||||| Sbjct 2320 TC---TACCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCC 2264 Query 94849 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 ||||| ||| ||| | || | |||| | |||||||| ||||| ||| | || || || Sbjct 2263 GGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTT 2205 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||| ||||| ||||| ||||| ||||| || ||| Sbjct 2204 CTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCAC 2168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583236222848040