Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 244 1e-59
seq481 123 3e-23
>seq2637
Length=17558
Score = 244 bits (270), Expect = 1e-59
Identities = 1175/1822 (64%), Gaps = 67/1822 (4%)
Strand=Plus/Minus
Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTC-TTGA 104213
|||||||| |||| ||||||||| || | ||||| | || |||||||| |||
Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATTGC 8863
Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273
|| | ||| || | ||| | ||||||||||| | || || || || || || || |
Sbjct 8862 TG-AGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCG 8804
Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 104331
| ||| | ||||||||| || |||||| |||| || |||| ||| ||| ||||
Sbjct 8803 AGGCTGCTATTGAGACATACAACTTGATGTCAAGCAAG-TAC-TTCACTCATGCATCACC 8746
Query 104332 AACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAA 104391
|| ||||| |||||||| ||| | || | || ||||||||| ||| ||
Sbjct 8745 CACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACAT 8686
Query 104392 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 104451
||||| || || |||| ||||| | || || | || ||||| || || ||
Sbjct 8685 GAAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAA 8626
Query 104452 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 104511
| || || |||||||| | ||||||| | | |||| | | ||
Sbjct 8625 GAATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGC 8566
Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571
|| || || || | || | || ||| |||| ||| | || || || ||| ||| ||
Sbjct 8565 TGGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGC 8506
Query 104572 GCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGA 104625
| ||||| | || | ||| ||| | | || || |||| |||| || ||
Sbjct 8505 TAGATATGTTGACCAGGGTGGCAACAAGCGCCCA---GGTGCTTTCGCTATCTACCTCGA 8449
Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685
|||||||||||| ||| | | |||| |||||| |||| ||||| || | |||||
Sbjct 8448 GCCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGA 8389
Query 104686 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744
| || ||| ||||||||||||| || | |||||||| ||||| ||||||||| | |
Sbjct 8388 AGTTCG-TGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTG 8330
Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804
| ||| ||| | | | ||| |||| | || || | || ||||| | | ||||
Sbjct 8329 TCGAGAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATG 8270
Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864
| ||||| ||||| || || || ||| |||||||| |||| ||| | | | | |
Sbjct 8269 TCTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGA-GAAGGAGGGCAAGGGTC-G 8212
Query 104865 C--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 104922
| ||| | ||| | | ||| | | || ||| || ||||||||||||| ||
Sbjct 8211 CAAGACTATCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGG 8152
Query 104923 TACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 104982
| |||| |||||| ||||| || || || |||| |||||| || || ||||| | ||
Sbjct 8151 AAACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGG 8092
Query 104983 TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 105042
| ||| || || || | || || ||||| |||| | | ||| ||||
Sbjct 8091 TACTATCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGAT 8032
Query 105043 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-- 105100
||||| || ||| | || || | || ||||| | ||||| || || |||| |
Sbjct 8031 TGCTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGA--CATGAACAACGGC 7974
Query 105101 ACATTTGATTATGAAAAACTCCACGAAGT-TACGAAAACTGTCACCAAAAACCTAAACAG 105159
|||| || | || || |||||||| || | | || | || ||| ||| ||||||
Sbjct 7973 ACATACGACTTTGCCAAGCTCCACGAGGTCTGCCAAGTC-GTTGTCAAGAACTTAAACAA 7915
Query 105160 AGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACA 105216
| | || |||| || | ||||| ||| ||| | || || | || | | ||
Sbjct 7914 AATCATCGATATCAACTACTACCCAGTTCCCGAGGCGAGACG--AAGC-AACTTTCGTCA 7858
Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCA 105273
||| || |||| | |||||||| ||||| || |||| ||| | || ||| |
Sbjct 7857 CCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCTTC- 7799
Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333
|||| || || || || ||| | |||| | || || |||||||| || ||
Sbjct 7798 --CATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTACCA 7741
Query 105334 CGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391
||| ||| |||| || | | ||| | || || | |||||||| ||||| || | |
Sbjct 7740 CGCTGCT-TTGA-CCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACATAT 7683
Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGACCA 105449
||||| ||||| || || | || | |||||||| ||| |||| || | | | ||
Sbjct 7682 GAGGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCA---TCACCCCC 7626
Query 105450 AGC-TTCACTACGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507
| | || || |||||||| |||| | ||| ||| |||||| | | ||| | || ||
Sbjct 7625 ACCGATCTCTGGGACTGGGATAGCT-TGAAGCAACAGATCAAGCAACATGGTATCCGCAA 7567
Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACA-AATCTTGGGTAATAATG 105566
|||| | || | ||||| |||||||| ||| |||| || | |||||| | || |
Sbjct 7566 CAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCT-TCAACG 7508
Query 105567 AATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTT 105625
| |||||||| || ||||| | ||||| || ||| | | || || || |||||
Sbjct 7507 AGTGCTTTGAGCCATACACTTCCAACATTTACTCT-CGCCGTGTGCTTGCTGGCGAGTTC 7449
Query 105626 GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGAT 105685
| | |||||| | || | ||| | ||| || || |||||||| | |
Sbjct 7448 CAGGTCGTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGACAAC 7389
Query 105686 ATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAAT 105745
|||||| | | ||| | | || |||||||| || || ||| | || ||| |
Sbjct 7388 ATGAAGAACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCAGCT 7329
Query 105746 GAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA--TGTCATTGACA 105803
|| || || ||||| || |||||||| ||| | || || | | || | |
Sbjct 7328 GATATCAAAGCTCTGTACAAGACCGTTTGGGAGATC--TCTCAACGAACTATTGTTCAGA 7271
Query 105804 TGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGG 105860
|||| || || ||||| ||| | ||| |||||| || ||| ||||| || ||||
Sbjct 7270 TGGCAGCCGACCGTGG-CGCATACATCGATCAA--TCCCAGTCGATGAACATCCACATGA 7214
Query 105861 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCA 105920
| |||||| ||| |||| || | |||||| | | |||||| ||| | |
Sbjct 7213 AGGATCCAACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGATTGA 7154
Query 105921 AAACGGGGATGTATTACCTCCG 105942
| || || ||||| ||||||||
Sbjct 7153 AGACTGGCATGTACTACCTCCG 7132
>seq481
Length=22500
Score = 123 bits (136), Expect = 3e-23
Identities = 161/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AG 94788
|||||||| || || | ||||| || || |||||| | | ||| || | |||| ||
Sbjct 2380 ACAGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAG 2321
Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848
|| | |||||||| | || || | ||||| || |||||||||||||||||||||
Sbjct 2320 TC---TACCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCC 2264
Query 94849 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907
||||| ||| ||| | || | |||| | |||||||| ||||| ||| | || || ||
Sbjct 2263 GGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTT 2205
Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|||||| ||||| ||||| ||||| ||||| || |||
Sbjct 2204 CTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCAC 2168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583236222848040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |