Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2981 277 5e-69
seq332 158 4e-33
seq3177 132 1e-25
seq2087 95.1 4e-14
>seq2981
Length=90661
Score = 277 bits (306), Expect = 5e-69
Identities = 940/1458 (64%), Gaps = 20/1458 (1%)
Strand=Plus/Plus
Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261
|| ||||| ||| | || ||||| || || ||||| | | | | | |||| || |
Sbjct 25968 ATCGGAATTGATCTTGGAACTACCTACTCCTGTGTGGGTATCTTCCGCGATGACCGAATC 26027
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
||||| ||||| || |||||||| ||| | || || || || | ||| || || || ||
Sbjct 26028 GAAATCATTGCCAACGATCAAGGCAACCGCACCACCCCCTCCTTCGTCGCCTTCACGGAT 26087
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
||||||||| |||| || ||| |||| |||||||||| ||| || || || ||
Sbjct 26088 ACTGAGCGTCTGATCGGAGATGCTGCGAAAAATCAAGTCGCTATGAACCCTGCGAACACT 26147
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441
|| || ||||||||||| ||||| ||| | | || | ||| || |||||
Sbjct 26148 GTCTTCGATGCTAAGCGTCTTATCGGTCGCAAGTTCGCAGACCCTGAGGTTCAGGCTGAT 26207
Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501
| || || || || || | || | | | | ||||| || ||| | ||||||||
Sbjct 26208 ATGAAGCACTTCCCATTCAAGGTCCT--CGATCG-CGGTGGAAAGCCAGTCGTTGAGGTT 26264
Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561
|| | || || || | || ||||| || || || || ||||| ||| | || ||
Sbjct 26265 GAGTTCAAGGGCGAGAAGAAGCAATTCACTCCTGAGGAGATCTCATCGATGATCTTGGTC 26324
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
|| |||| || | |||||| || || | |||| ||| || | | ||||| |||||
Sbjct 26325 AAGATGAGAGAGACTGCTGAGGCCTACCTTGGTGGAACCGTCAACAACGCTGTCGTTACT 26384
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || | ||| | || ||| || || || || |||||| |||||
Sbjct 26385 GTCCCTGCCTACTTCACTGACTCACAACGTCAAGCCACCAAGGACGCTGGCCTGATTGCT 26444
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | || ||||| |||| || ||||| || || || || || ||||| || || |
Sbjct 26445 GGCCTCAACGTTCTCCGAATCATCAATGAGCCTACCGCAGCCGCCATTGCCTACGGTTTG 26504
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| || | | ||| || || | || || || ||| | ||||| || || ||
Sbjct 26505 GACAAGAAGGTTGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGAGGAACCTTC 26564
Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861
||||| || || | || |||| ||||| || || || || || | ||||||||||||
Sbjct 26565 GATGTCTCTCTTTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGAT 26624
Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTT 349921
|| || | ||||| || || || || || ||||| || || || || || || ||
Sbjct 26625 ACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAACGAGTTC 26684
Query 349922 AAGCGTCAAGC-----TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976
||||| ||||| || ||| || || || || | || | ||||| ||
Sbjct 26685 AAGCG-CAAGCACAAGAAAGATTTATCTT----CCAACGCTCGTGCTCTCCGTCGTCTCC 26739
Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036
| ||||| || || ||||| ||||| || | || || | |||||||||| |||||||
Sbjct 26740 GCACTGCTTGCGAGCGTGCCAAGCGAACCCTCTCCTCATCCGCCCAAACCTCCATTGAAA 26799
Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096
| || ||||| || || | ||||||| | || || || ||||||||||| || |
Sbjct 26800 TCGACTCTCTCTTCGAGGGTATTGATTTCTACACCTCCATCACCCGTGCTCGGTTCGAGG 26859
Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156
| | || ||| || || || |||| | || || || || | || |
Sbjct 26860 AGCTTTGCCAGGACCTCTTCCGATCAACCACCACCCCAGTCGACCGTGTCCTTGCTGACG 26919
Query 350157 CAAAAATGTCCAAAAATC--AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTAT 350214
| || | | | || || || | | || | ||| | ||||| ||||| || |||||
Sbjct 26920 CCAAGA--TTGATAAGTCAAAGGTCCACGAGATCGTTCTCGTTGGAGGTTCCACCCGTAT 26977
Query 350215 TCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274
||| ||||| || | | | || | || || ||||| || || | |||||
Sbjct 26978 TCCCCGTATTCAAAAGCTCATCACCGACTACTTCAACGGCAAGGAGCCCAACAAGTCAAT 27037
Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334
|| || ||||| || || || || ||||| || || ||||| | ||| | ||||| |
Sbjct 27038 CAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCTGCCATTCTCTCTGGTGA 27097
Query 350335 TAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391
| ||||| || | || | || | || ||||| | ||| | || | ||
Sbjct 27098 CACCTCATCTAAGTCAACCAACGAGATCTTGTTGCTCGATGTGGCGCCATTGTCCATCGG 27157
Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451
| || ||| |||||| ||||| || ||||| | || | ||| | || ||
Sbjct 27158 TATCGAGACTGCTGGTGGCCAGATGACCAAGCTCATTCCCCGCAACACCACTATTCCCAC 27217
Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGT 350511
|| ||||| | ||| ||||| || | ||||| || || | || || |||||
Sbjct 27218 CAAGAAGTCAGAGGTTTTCTCTACCTTCTCCGATAACCAACCTGGTGTCCTCATCCAAGT 27277
Query 350512 ATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG 350571
|| || ||||||||| ||||| || || || || | || | || || |
Sbjct 27278 CTTCGAGGGTGAACGTCAACGCACCAAGGACAACAACCTGTTGGGCAAGTTCGAGCTCAC 27337
Query 350572 TGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTC 350631
|| || ||||| ||| | || |||||||| || || ||| | |||||| | ||| |
Sbjct 27338 TGGTATCCCACCTGCGCCCCGTGGTGTTCCTCAAATCGAGGTCACCTTCGATGTCGATGC 27397
Query 350632 AAATGGTATTTTAAATGT 350649
|| ||||| |||| ||
Sbjct 27398 CAACGGTATCATAAACGT 27415
>seq332
Length=18159
Score = 158 bits (174), Expect = 4e-33
Identities = 176/235 (75%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || || | || ||||||||||| ||||| || || |
Sbjct 2008 TTTGCATACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGT 2067
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || || || ||||| |||||||| ||||| ||||| || ||||| |||||||
Sbjct 2068 AGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGAT 2127
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || ||||| ||||| || | || || || || || | ||| || |
Sbjct 2128 CCGGGGGAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGG 2187
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||||||||| || | ||||| ||||| || || || || || ||||||||
Sbjct 2188 ACTCAACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 138 bits (152), Expect = 3e-27
Identities = 164/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| |||||||| || ||||| || || || ||||| ||
Sbjct 2240 CATACCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTC 2299
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || |||||||| || || || || || | ||||||||| |||||
Sbjct 2300 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGG 2359
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685
|||||| || || || |||||||| || | || ||||| || || | ||| | ||| |
Sbjct 2360 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATC-GCTGGACT 2418
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|||| ||||| || | ||||| ||||| || || || ||
Sbjct 2419 CAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2458
Score = 136 bits (150), Expect = 1e-26
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || | || ||||||||||| ||||| || || |||||
Sbjct 1787 ACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCT 1846
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || ||||| || || || || ||||||||||| || || ||||| ||||| ||
Sbjct 1847 CAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGG 1906
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||| || ||||||||||| || | || || || ||||||| || || | || ||
Sbjct 1907 GATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 1966
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| | ||||| ||||| || || | || || ||||| || |||||
Sbjct 1967 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
>seq3177
Length=131459
Score = 132 bits (146), Expect = 1e-25
Identities = 481/736 (65%), Gaps = 19/736 (3%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| ||||| ||||| || || || || || || ||||||| || || || |||||
Sbjct 115994 GCCGTTATCACTGTTCCCGCATACTTCAACGACAACCAGCGTCAAGCTACCAAGGATGCC 115935
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| ||| || || | || ||||| | || || || || || ||||| || || ||
Sbjct 115934 GGTGCCATCGCTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACTGCCGCTGCTATC 115875
Query 349730 GCATATGGGCT---TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786
|| || || || || | || | || | || |||| || | |||| |||| |
Sbjct 115874 GCCTACGGTCTCGGTGCTGGAAAGTCCAACAAGGAGCGAAATGTTTTGATTTATGATCTC 115815
Query 349787 GGTGGTGGTACTTTTGATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAA 349845
|||||||| ||||| ||||| || || || |||| || | | || |||| || ||
Sbjct 115814 GGTGGTGGAACTTTCGATGTCTCCCTCCTCAACA-TTCAGGGAGGTGTTTTCACTGTCAA 115756
Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCG-TTTCGC 349904
|| |||||||||||||| || | || ||| | ||||| ||| | | || | || ||
Sbjct 115755 GGCTACTGCTGGTGATACCCACTTGGGAGGACAGGATTTCGAT-ACCAACTTGCTTGAGC 115697
Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCA 349963
| || || || || |||| |||| | || | ||||| | | || | ||
Sbjct 115696 ACTTCAAGAAGGAGTTCCAGCG-CAAGACCAAGAAGGATATGTCCAACGACCCCCGTGCC 115638
Query 349964 ATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCA 350022
| | || || | || || || || ||||||||||| | ||| || | | | ||
Sbjct 115637 CTTAGACGTCTCCGTACCGCTTGCGAGCGTGCTAAGCGAACTCTTTCCAAC-GGTGCTCA 115579
Query 350023 AACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACG 350082
||| || ||||||||||||| || |||||| | |||||| | || || ||
Sbjct 115578 GACCACTGTTGAAATTGATTCCCTGTTTGATGGAGAGGATTTCAACGCCCAAATCACCCG 115519
Query 350083 TGCTCGGTTTGAAGAATTATGTAT--GGATCTTTTTAGAGCAACAATGGATCCTGTGGAA 350140
|||||| || || || | || || | ||| | | || ||||||| || |
Sbjct 115518 TGCTCGTTTCGAGGA--TCTGAATTCCAAGGCTTTCAATGGTACTTTGGATCCGGTTGCC 115461
Query 350141 AAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGT 350200
|||| || || ||||| || | || | | || | ||||| | ||| | ||||||
Sbjct 115460 CAAGTCTTGAAGGATGCGAACCTCGATAAGAGTAAGGTCGATGAGATCGTTCTTGTTGGT 115401
Query 350201 GGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAA 350260
|| ||||| |||||||| | ||| || | || ||| || ||| | || ||||||
Sbjct 115400 GGATCTACCCGTATTCCCCGGATACAAAAGCTCCTGAGTGATTTCTTTGACGG-AAAGAA 115342
Query 350261 CCTT--CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCAT 350318
||| ||| | || || || ||||| |||||||| || |||||||||||||||||
Sbjct 115341 GCTTGAGAAGAGC-ATCAACCCCGATGAGGCTGTTGCGTACGGTGCTGCTGTTCAGGCTG 115283
Query 350319 CTATTTTATCTGGAAA 350334
||| | || |||||
Sbjct 115282 GTATCCTCTCCGGAAA 115267
>seq2087
Length=9274
Score = 95.1 bits (104), Expect = 4e-14
Identities = 100/131 (76%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || |||||| | ||||||||| || || | ||||||||||| |||||||| ||
Sbjct 3855 CGAGGAACACCAAGAGTAACATTC---TTGGAAGACACACCAGCAAAATGGAAAGTGTTC 3911
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
| || | || || | |||||| ||||| ||||| || |||| || |||||||| |||
Sbjct 3912 AATGTCATCTGGGTTGCGGGCTCTCCAATGGACTGGGCCGCAAGGACACCAACCATCTCT 3971
Query 377578 CCAGGATTGAC 377588
|| ||||||||
Sbjct 3972 CCTGGATTGAC 3982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515188954741913
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