Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2981 277 5e-69 seq332 158 4e-33 seq3177 132 1e-25 seq2087 95.1 4e-14 >seq2981 Length=90661 Score = 277 bits (306), Expect = 5e-69 Identities = 940/1458 (64%), Gaps = 20/1458 (1%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || ||||| ||| | || ||||| || || ||||| | | | | | |||| || | Sbjct 25968 ATCGGAATTGATCTTGGAACTACCTACTCCTGTGTGGGTATCTTCCGCGATGACCGAATC 26027 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| ||||| || |||||||| ||| | || || || || | ||| || || || || Sbjct 26028 GAAATCATTGCCAACGATCAAGGCAACCGCACCACCCCCTCCTTCGTCGCCTTCACGGAT 26087 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 ||||||||| |||| || ||| |||| |||||||||| ||| || || || || Sbjct 26088 ACTGAGCGTCTGATCGGAGATGCTGCGAAAAATCAAGTCGCTATGAACCCTGCGAACACT 26147 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || ||||||||||| ||||| ||| | | || | ||| || ||||| Sbjct 26148 GTCTTCGATGCTAAGCGTCTTATCGGTCGCAAGTTCGCAGACCCTGAGGTTCAGGCTGAT 26207 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | || | | | | ||||| || ||| | |||||||| Sbjct 26208 ATGAAGCACTTCCCATTCAAGGTCCT--CGATCG-CGGTGGAAAGCCAGTCGTTGAGGTT 26264 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 || | || || || | || ||||| || || || || ||||| ||| | || || Sbjct 26265 GAGTTCAAGGGCGAGAAGAAGCAATTCACTCCTGAGGAGATCTCATCGATGATCTTGGTC 26324 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||| || | |||||| || || | |||| ||| || | | ||||| ||||| Sbjct 26325 AAGATGAGAGAGACTGCTGAGGCCTACCTTGGTGGAACCGTCAACAACGCTGTCGTTACT 26384 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || | ||| | || ||| || || || || |||||| ||||| Sbjct 26385 GTCCCTGCCTACTTCACTGACTCACAACGTCAAGCCACCAAGGACGCTGGCCTGATTGCT 26444 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || ||||| |||| || ||||| || || || || || ||||| || || | Sbjct 26445 GGCCTCAACGTTCTCCGAATCATCAATGAGCCTACCGCAGCCGCCATTGCCTACGGTTTG 26504 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| || || | || || || ||| | ||||| || || || Sbjct 26505 GACAAGAAGGTTGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGAGGAACCTTC 26564 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || | || |||| ||||| || || || || || | |||||||||||| Sbjct 26565 GATGTCTCTCTTTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGAT 26624 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTT 349921 || || | ||||| || || || || || ||||| || || || || || || || Sbjct 26625 ACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAACGAGTTC 26684 Query 349922 AAGCGTCAAGC-----TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 ||||| ||||| || ||| || || || || | || | ||||| || Sbjct 26685 AAGCG-CAAGCACAAGAAAGATTTATCTT----CCAACGCTCGTGCTCTCCGTCGTCTCC 26739 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | ||||| || || ||||| ||||| || | || || | |||||||||| ||||||| Sbjct 26740 GCACTGCTTGCGAGCGTGCCAAGCGAACCCTCTCCTCATCCGCCCAAACCTCCATTGAAA 26799 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || ||||| || || | ||||||| | || || || ||||||||||| || | Sbjct 26800 TCGACTCTCTCTTCGAGGGTATTGATTTCTACACCTCCATCACCCGTGCTCGGTTCGAGG 26859 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | | || ||| || || || |||| | || || || || | || | Sbjct 26860 AGCTTTGCCAGGACCTCTTCCGATCAACCACCACCCCAGTCGACCGTGTCCTTGCTGACG 26919 Query 350157 CAAAAATGTCCAAAAATC--AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTAT 350214 | || | | | || || || | | || | ||| | ||||| ||||| || ||||| Sbjct 26920 CCAAGA--TTGATAAGTCAAAGGTCCACGAGATCGTTCTCGTTGGAGGTTCCACCCGTAT 26977 Query 350215 TCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274 ||| ||||| || | | | || | || || ||||| || || | ||||| Sbjct 26978 TCCCCGTATTCAAAAGCTCATCACCGACTACTTCAACGGCAAGGAGCCCAACAAGTCAAT 27037 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || ||||| || || || || ||||| || || ||||| | ||| | ||||| | Sbjct 27038 CAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCTGCCATTCTCTCTGGTGA 27097 Query 350335 TAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 | ||||| || | || | || | || ||||| | ||| | || | || Sbjct 27098 CACCTCATCTAAGTCAACCAACGAGATCTTGTTGCTCGATGTGGCGCCATTGTCCATCGG 27157 Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451 | || ||| |||||| ||||| || ||||| | || | ||| | || || Sbjct 27158 TATCGAGACTGCTGGTGGCCAGATGACCAAGCTCATTCCCCGCAACACCACTATTCCCAC 27217 Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGT 350511 || ||||| | ||| ||||| || | ||||| || || | || || ||||| Sbjct 27218 CAAGAAGTCAGAGGTTTTCTCTACCTTCTCCGATAACCAACCTGGTGTCCTCATCCAAGT 27277 Query 350512 ATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG 350571 || || ||||||||| ||||| || || || || | || | || || | Sbjct 27278 CTTCGAGGGTGAACGTCAACGCACCAAGGACAACAACCTGTTGGGCAAGTTCGAGCTCAC 27337 Query 350572 TGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTC 350631 || || ||||| ||| | || |||||||| || || ||| | |||||| | ||| | Sbjct 27338 TGGTATCCCACCTGCGCCCCGTGGTGTTCCTCAAATCGAGGTCACCTTCGATGTCGATGC 27397 Query 350632 AAATGGTATTTTAAATGT 350649 || ||||| |||| || Sbjct 27398 CAACGGTATCATAAACGT 27415 >seq332 Length=18159 Score = 158 bits (174), Expect = 4e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | || ||||||||||| ||||| || || | Sbjct 2008 TTTGCATACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGT 2067 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| |||||||| ||||| ||||| || ||||| ||||||| Sbjct 2068 AGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGAT 2127 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || ||||| ||||| || | || || || || || | ||| || | Sbjct 2128 CCGGGGGAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGG 2187 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||||| || | ||||| ||||| || || || || || |||||||| Sbjct 2188 ACTCAACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| |||||||| || ||||| || || || ||||| || Sbjct 2240 CATACCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTC 2299 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| || || || || || | ||||||||| ||||| Sbjct 2300 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGG 2359 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 |||||| || || || |||||||| || | || ||||| || || | ||| | ||| | Sbjct 2360 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATC-GCTGGACT 2418 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 |||| ||||| || | ||||| ||||| || || || || Sbjct 2419 CAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2458 Score = 136 bits (150), Expect = 1e-26 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || ||||||||||| ||||| || || ||||| Sbjct 1787 ACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCT 1846 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || || || || ||||||||||| || || ||||| ||||| || Sbjct 1847 CAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGG 1906 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || ||||||||||| || | || || || ||||||| || || | || || Sbjct 1907 GATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 1966 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| | ||||| ||||| || || | || || ||||| || ||||| Sbjct 1967 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 >seq3177 Length=131459 Score = 132 bits (146), Expect = 1e-25 Identities = 481/736 (65%), Gaps = 19/736 (3%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||||| ||||| || || || || || || ||||||| || || || ||||| Sbjct 115994 GCCGTTATCACTGTTCCCGCATACTTCAACGACAACCAGCGTCAAGCTACCAAGGATGCC 115935 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||| || || | || ||||| | || || || || || ||||| || || || Sbjct 115934 GGTGCCATCGCTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACTGCCGCTGCTATC 115875 Query 349730 GCATATGGGCT---TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || || || || || | || | || | || |||| || | |||| |||| | Sbjct 115874 GCCTACGGTCTCGGTGCTGGAAAGTCCAACAAGGAGCGAAATGTTTTGATTTATGATCTC 115815 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 |||||||| ||||| ||||| || || || |||| || | | || |||| || || Sbjct 115814 GGTGGTGGAACTTTCGATGTCTCCCTCCTCAACA-TTCAGGGAGGTGTTTTCACTGTCAA 115756 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCG-TTTCGC 349904 || |||||||||||||| || | || ||| | ||||| ||| | | || | || || Sbjct 115755 GGCTACTGCTGGTGATACCCACTTGGGAGGACAGGATTTCGAT-ACCAACTTGCTTGAGC 115697 Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCA 349963 | || || || || |||| |||| | || | ||||| | | || | || Sbjct 115696 ACTTCAAGAAGGAGTTCCAGCG-CAAGACCAAGAAGGATATGTCCAACGACCCCCGTGCC 115638 Query 349964 ATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCA 350022 | | || || | || || || || ||||||||||| | ||| || | | | || Sbjct 115637 CTTAGACGTCTCCGTACCGCTTGCGAGCGTGCTAAGCGAACTCTTTCCAAC-GGTGCTCA 115579 Query 350023 AACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACG 350082 ||| || ||||||||||||| || |||||| | |||||| | || || || Sbjct 115578 GACCACTGTTGAAATTGATTCCCTGTTTGATGGAGAGGATTTCAACGCCCAAATCACCCG 115519 Query 350083 TGCTCGGTTTGAAGAATTATGTAT--GGATCTTTTTAGAGCAACAATGGATCCTGTGGAA 350140 |||||| || || || | || || | ||| | | || ||||||| || | Sbjct 115518 TGCTCGTTTCGAGGA--TCTGAATTCCAAGGCTTTCAATGGTACTTTGGATCCGGTTGCC 115461 Query 350141 AAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGT 350200 |||| || || ||||| || | || | | || | ||||| | ||| | |||||| Sbjct 115460 CAAGTCTTGAAGGATGCGAACCTCGATAAGAGTAAGGTCGATGAGATCGTTCTTGTTGGT 115401 Query 350201 GGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAA 350260 || ||||| |||||||| | ||| || | || ||| || ||| | || |||||| Sbjct 115400 GGATCTACCCGTATTCCCCGGATACAAAAGCTCCTGAGTGATTTCTTTGACGG-AAAGAA 115342 Query 350261 CCTT--CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCAT 350318 ||| ||| | || || || ||||| |||||||| || ||||||||||||||||| Sbjct 115341 GCTTGAGAAGAGC-ATCAACCCCGATGAGGCTGTTGCGTACGGTGCTGCTGTTCAGGCTG 115283 Query 350319 CTATTTTATCTGGAAA 350334 ||| | || ||||| Sbjct 115282 GTATCCTCTCCGGAAA 115267 >seq2087 Length=9274 Score = 95.1 bits (104), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | ||||||||| || || | ||||||||||| |||||||| || Sbjct 3855 CGAGGAACACCAAGAGTAACATTC---TTGGAAGACACACCAGCAAAATGGAAAGTGTTC 3911 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 | || | || || | |||||| ||||| ||||| || |||| || |||||||| ||| Sbjct 3912 AATGTCATCTGGGTTGCGGGCTCTCCAATGGACTGGGCCGCAAGGACACCAACCATCTCT 3971 Query 377578 CCAGGATTGAC 377588 || |||||||| Sbjct 3972 CCTGGATTGAC 3982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515188954741913