Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2637 232 7e-56 seq2295 123 3e-23 seq481 84.2 2e-11 >seq2637 Length=17558 Score = 232 bits (256), Expect = 7e-56 Identities = 510/755 (68%), Gaps = 22/755 (3%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 |||||||| || | || ||||||||||| || | | || |||||| ||| || Sbjct 8840 ATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGAGGCTGCTATTGAGACATACAAC 8781 Query 53255 TTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || ||| ||| |||||||| || || || | || || || || |||||||||| Sbjct 8780 TTGATGT--CAAGCAAGTACTTCACTCATGCATCACCCACACTCTTTGCCGCTGGTACGC 8723 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || ||||| | || |||||||| || | |||||||| || || ||||||| Sbjct 8722 CACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATGAAGGAAGATAGCATTGACGGCA 8663 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || ||||||| |||||| || |||||| |||| ||||| ||| | Sbjct 8662 TCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGAATGCGGGAGGTATTGGTCTAA 8603 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| | ||||| | || | ||| || || ||||| | || | Sbjct 8602 ACATCCACAGAA--TTCGTGCCACTGGTGCCTACATCGCTGGTACCAACGGAAACTCCAA 8545 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||||| || || ||| | || |||||||||||||| || | || || |||||||||| Sbjct 8544 CGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCTAGATATGTTGACCAGGGTGG 8485 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 |||||| || | ||||| |||||||||||||| ||||||||||| || | || Sbjct 8484 CAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCATGGCACGCCGATGTTTTCGA 8425 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 || || || ||||| ||| || || | || || | || ||| || || || || Sbjct 8424 GTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTCG-TGCTCGCGATCTCTTCT 8366 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || |||||||||| || || |||||| | || |||||| ||| |||||| | Sbjct 8365 ATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGGACTC 8306 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | |||||||| || |||||||| ||| | | |||||||||||| ||||| | | Sbjct 8305 TTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGTTCGAGGCTC 8246 Query 53790 TGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 |||| || |||| | || | |||| ||| |||| ||||||| | Sbjct 8245 TGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGACTATCAAGGCTCAAA 8192 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 || | ||| | | |||||| || || ||||| |||| || | |||| ||||| Sbjct 8191 AGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTACA 8132 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||||| | |||| |||||||||||||||||| Sbjct 8131 AGGATGCATGCAACCGAAAGAGCAACCAGAAGAAC 8097 >seq2295 Length=74258 Score = 123 bits (136), Expect = 3e-23 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || |||||||| | ||||||||||| | ||||||| | Sbjct 69744 GTGAAAATGTAACGAGGACTGGCAGCATCACTACCACCAGCAAGTCTACTACCGAAAGAT 69685 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || ||||||||| ||| | |||||| | ||||||||||| ||||| | | | Sbjct 69684 CCGCTGGGCTCCAAGCAGTTGATGTTGTTTGATCCCACAAAGTTCTGAGCGAGACCAATA 69625 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || | | || || || || || || ||||| | || | ||||| || Sbjct 69624 ATAGTCTGGTGCATGGAAGCTTCGCCGTGATGGTATGCCGTGTTTTCTGAGACGTACCCA 69565 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 |||| | | |||||||||||| || || || |||||| ||| || || || ||| Sbjct 69564 GCCAATTCGACAACCTTCATGTCTCGAGTGAGATTTCTCTTGAAGCAAGCGTACATAACC 69505 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 || ||||| | ||||| | ||| || Sbjct 69504 TTACGCTGTCCAGGCTTGAAACCGTC 69479 Score = 95.1 bits (104), Expect = 1e-14 Identities = 193/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||||| ||||| | ||||| || || | | || || | Sbjct 69744 GTGAAAATGTAACGAGGACTGGCAGCATCACTACCACCAGCAAGTCTACTACCGAAAGAT 69685 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||||| | | ||||| |||||| | ||||| || |||||||| | | | | Sbjct 69684 CCGCTGGGCTCCAAGCAGTTGATGTTGTTTGATCCCACAAAGTTCTGAGCGAGACCAATA 69625 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || |||| ||||| ||||| || || ||||| | || | || ||| || Sbjct 69624 ATAGTCTGGTGCATGGAAGCTTCGCCGTGATGGTATGCCGTGTTTTCTGAGACGTACCCA 69565 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 ||||| | | ||||||||||| || || || |||||| || ||||| || ||| Sbjct 69564 GCCAATTCGACAACCTTCATGTCTCGAGTGAGATTTCTCTTGAAGCAAGCGTACATAACC 69505 Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 || ||||| || || |||||||| | || |||||| || || Sbjct 69504 TTACGCTGTCCAGGCTTGAAACCGTCAATAACAGAAGGAATTGATCG 69458 >seq481 Length=22500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 ||||| || || | ||| || | ||| || ||||||||||||||||||||||||| | Sbjct 2196 TCATTGGAGAAAGTAAGCCCGGCCATCAGACCACGCTTCTTCAACCAAAAGATGGACGCG 2255 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || ||||| ||||||||| || || ||| || || || ||||| ||||| || || Sbjct 2256 AATGAACCGGAGAAGAAGATACCCTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAA 2314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192941685800