Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 232 7e-56
seq2295 123 3e-23
seq481 84.2 2e-11
>seq2637
Length=17558
Score = 232 bits (256), Expect = 7e-56
Identities = 510/755 (68%), Gaps = 22/755 (3%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
|||||||| || | || ||||||||||| || | | || |||||| ||| ||
Sbjct 8840 ATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGAGGCTGCTATTGAGACATACAAC 8781
Query 53255 TTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| ||| ||| |||||||| || || || | || || || || ||||||||||
Sbjct 8780 TTGATGT--CAAGCAAGTACTTCACTCATGCATCACCCACACTCTTTGCCGCTGGTACGC 8723
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| ||||| | || |||||||| || | |||||||| || || |||||||
Sbjct 8722 CACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATGAAGGAAGATAGCATTGACGGCA 8663
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || ||||||| |||||| || |||||| |||| ||||| ||| |
Sbjct 8662 TCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGAATGCGGGAGGTATTGGTCTAA 8603
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| | ||||| | || | ||| || || ||||| | || |
Sbjct 8602 ACATCCACAGAA--TTCGTGCCACTGGTGCCTACATCGCTGGTACCAACGGAAACTCCAA 8545
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||||| || || ||| | || |||||||||||||| || | || || ||||||||||
Sbjct 8544 CGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCTAGATATGTTGACCAGGGTGG 8485
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
|||||| || | ||||| |||||||||||||| ||||||||||| || | ||
Sbjct 8484 CAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCATGGCACGCCGATGTTTTCGA 8425
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669
|| || || ||||| ||| || || | || || | || ||| || || || ||
Sbjct 8424 GTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTCG-TGCTCGCGATCTCTTCT 8366
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
|| |||||||||| || || |||||| | || |||||| ||| |||||| |
Sbjct 8365 ATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGGACTC 8306
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
| |||||||| || |||||||| ||| | | |||||||||||| ||||| | |
Sbjct 8305 TTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGTTCGAGGCTC 8246
Query 53790 TGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843
|||| || |||| | || | |||| ||| |||| ||||||| |
Sbjct 8245 TGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGACTATCAAGGCTCAAA 8192
Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903
|| | ||| | | |||||| || || ||||| |||| || | |||| |||||
Sbjct 8191 AGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTACA 8132
Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||||| | |||| ||||||||||||||||||
Sbjct 8131 AGGATGCATGCAACCGAAAGAGCAACCAGAAGAAC 8097
>seq2295
Length=74258
Score = 123 bits (136), Expect = 3e-23
Identities = 187/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| || |||||||| | ||||||||||| | ||||||| |
Sbjct 69744 GTGAAAATGTAACGAGGACTGGCAGCATCACTACCACCAGCAAGTCTACTACCGAAAGAT 69685
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| || ||||||||| ||| | |||||| | ||||||||||| ||||| | | |
Sbjct 69684 CCGCTGGGCTCCAAGCAGTTGATGTTGTTTGATCCCACAAAGTTCTGAGCGAGACCAATA 69625
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || || | | || || || || || || ||||| | || | ||||| ||
Sbjct 69624 ATAGTCTGGTGCATGGAAGCTTCGCCGTGATGGTATGCCGTGTTTTCTGAGACGTACCCA 69565
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
|||| | | |||||||||||| || || || |||||| ||| || || || |||
Sbjct 69564 GCCAATTCGACAACCTTCATGTCTCGAGTGAGATTTCTCTTGAAGCAAGCGTACATAACC 69505
Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570
|| ||||| | ||||| | ||| ||
Sbjct 69504 TTACGCTGTCCAGGCTTGAAACCGTC 69479
Score = 95.1 bits (104), Expect = 1e-14
Identities = 193/287 (67%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| ||||| || | ||||| ||||| | ||||| || || | | || || |
Sbjct 69744 GTGAAAATGTAACGAGGACTGGCAGCATCACTACCACCAGCAAGTCTACTACCGAAAGAT 69685
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| |||||| | | ||||| |||||| | ||||| || |||||||| | | | |
Sbjct 69684 CCGCTGGGCTCCAAGCAGTTGATGTTGTTTGATCCCACAAAGTTCTGAGCGAGACCAATA 69625
Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208
|| || |||| ||||| ||||| || || ||||| | || | || ||| ||
Sbjct 69624 ATAGTCTGGTGCATGGAAGCTTCGCCGTGATGGTATGCCGTGTTTTCTGAGACGTACCCA 69565
Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268
||||| | | ||||||||||| || || || |||||| || ||||| || |||
Sbjct 69564 GCCAATTCGACAACCTTCATGTCTCGAGTGAGATTTCTCTTGAAGCAAGCGTACATAACC 69505
Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315
|| ||||| || || |||||||| | || |||||| || ||
Sbjct 69504 TTACGCTGTCCAGGCTTGAAACCGTCAATAACAGAAGGAATTGATCG 69458
>seq481
Length=22500
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849
||||| || || | ||| || | ||| || ||||||||||||||||||||||||| |
Sbjct 2196 TCATTGGAGAAAGTAAGCCCGGCCATCAGACCACGCTTCTTCAACCAAAAGATGGACGCG 2255
Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|| ||||| ||||||||| || || ||| || || || ||||| ||||| || ||
Sbjct 2256 AATGAACCGGAGAAGAAGATACCCTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAA 2314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547192941685800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |