Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 205 1e-47
seq332 194 2e-44
seq507 145 9e-30
seq1884 136 5e-27
seq2295 113 5e-20
>seq2637
Length=17558
Score = 205 bits (226), Expect = 1e-47
Identities = 774/1198 (65%), Gaps = 31/1198 (3%)
Strand=Plus/Plus
Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622
|||| ||| |||||||| ||| | | ||||| || || || || ||||||| ||||||
Sbjct 7660 CCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAAGCTCA 7719
Query 80623 CACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682
||| | | | || ||||| || ||| ||| |||| |||| | | ||
Sbjct 7720 ATCGAAGCGGTCAAAGCAGCGTGGTAGATGGTCTCGAAGATTTGGATGTTGAG---GTGC 7776
Query 80683 ---GCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGA 80739
|||| || |||||| | | | | || ||| | || || || || |||
Sbjct 7777 TTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAGCATCTGCAAGACCTTGA 7836
Query 80740 ACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG-CTCGGCCTCCGGAATTGGGTA 80798
|| || | ||| || || ||||| || ||| ||| |||| |||| |||| ||||||
Sbjct 7837 ACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCGTCTCG-CCTCGGGAACTGGGTA 7895
Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AACAACCCGTGTAACATCATGAA 80857
|||| ||||||||| ||| | ||| | || ||| || | || || || |
Sbjct 7896 GTAGTTGATATCGATGATTTTGTTTAAGTT-CTTGACAACGACTTGGCAGACCTCGTGGA 7954
Query 80858 GTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACG 80911
| || ||||||| || | |||| | ||| | | ||| || ||||| |
Sbjct 7955 GCTTGGCAAAGTCGTATGTGCCGTTGTTCATGTCAACATAAGTCGGGAGCGCAAGGGAGG 8014
Query 80912 CCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAAT 80971
||| ||||| || || | ||| || | | |||| || ||||| |||||||| |
Sbjct 8015 CCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTTCAGTGCACAAGT 8074
Query 80972 TAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029
|||| ||| || ||||| ||||| |||||||| ||| |||||| || |||||
Sbjct 8075 TAGAG--CTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTT 8132
Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089
|||| |||| | ||| | ||||||||| || | || |||||||| || ||||| ||
Sbjct 8133 GTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTT 8192
Query 81090 GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTC 81149
| ||||||| |||||| ||||| || | | ||||| |||| | ||
Sbjct 8193 TTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCCTC 8252
Query 81150 GAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA 81209
||||| |||||| | |||| | | | |||||||| || |||||||| || |||
Sbjct 8253 GAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCA 8312
Query 81210 GTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAG 81269
|||| || ||||| ||| ||||||||| || || ||||| | ||| ||| ||
Sbjct 8313 CTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAAGAG 8372
Query 81270 GTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGA 81328
||||| ||| || | ||||| | || ||||| |||| || || | || | |
Sbjct 8373 ATCGCGAGCA-CGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAA 8431
Query 81329 TGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCT 81385
|| || ||||||||||| || || | |||| | || ||| ||||||||
Sbjct 8432 CATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCT 8491
Query 81386 GGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACT 81445
||| || || | ||||| ||| || || |||||||| || | || || | || |
Sbjct 8492 GGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGAGT 8551
Query 81446 GACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGA 81505
||||| ||||| |||| | || |||| || | || ||| ||||| |
Sbjct 8552 TTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACCAA 8611
Query 81506 TGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGA 81565
| || || | ||| |||||| ||||| || | ||| || || || || || |
Sbjct 8612 TACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAA 8671
Query 81566 TGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CC 81623
||||||||| |||||||| | | ||| || || | |||| || | | | | ||
Sbjct 8672 TGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGA--GCCTGTGGCGTACC 8729
Query 81624 GGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGT 81683
|| || ||||| || | || ||| |||| || | ||||||||| || || ||
Sbjct 8730 AGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGT 8789
Query 81684 TTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740
|| | | || | | ||||| |||||||| || || | || || ||||||| |||
Sbjct 8790 CTCAATAGCAGCCTCG-ATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATCAT 8846
>seq332
Length=18159
Score = 194 bits (214), Expect = 2e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| | || ||||| || |||||||| ||||| || || |||
Sbjct 2182 GATACCATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCAG 2123
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| |||||||| || |||||||| ||||||| |||||| | | ||||| ||
Sbjct 2122 CAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAAC 2063
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || ||||| || | ||| | ||||| ||||||||
Sbjct 2062 ATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGTCTCCGCGGTGG 2016
Score = 190 bits (210), Expect = 2e-43
Identities = 171/215 (80%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || || |||||||||||||| | |||| ||| |
Sbjct 2458 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCGAC 2399
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct 2398 AATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAACGTTTGATT 2339
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || |||||||| ||||| | || ||||| | |||||||| |||| |||||
Sbjct 2338 TTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTATAACATCCAGAAGGAG 2279
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| |||||||| || | ||||| || |||||
Sbjct 2278 TCCACCCTTCATCTCGTTCTCCGTCTCCGTGGTGG 2244
Score = 163 bits (180), Expect = 3e-35
Identities = 177/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| | || |||||||||||||| | || || |||||
Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || |||||||| ||||||||||| || || ||||||
Sbjct 1954 GACACGATTGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCAG 1895
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || |||||||||||||| || ||||||| ||||| | ||| || || ||
Sbjct 1894 CAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGC-GATTACAA 1836
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||||||||| || ||||| || | ||| | ||||| || ||||| |||
Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGTCTCCGTGGTGGTCAA 1784
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || ||||| || ||||| | || | ||| | ||| | ||| |
Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| |||||||| ||||| || || || || || ||||| |||
Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | ||| || || | ||||| || | || ||||| |||||||||||
Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| || | |||||||| || ||
Sbjct 2549 CTTGTTCTCCGTCTTCGTGGCGG 2527
>seq507
Length=44608
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || |||||||| ||||| | || | ||| | ||| | ||| |
Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || ||||||||||| || || || || || |||
Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||||| ||||| || | ||||| || |||| ||||| ||||| || ||
Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 34525
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || |||||||||||
Sbjct 34524 TTGGTTCTCCGCCTTCGCGGTGG 34502
>seq1884
Length=68653
Score = 136 bits (150), Expect = 5e-27
Identities = 144/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||| | | ||| |||||||| ||||| |||||||| || ||| | ||||| ||||||
Sbjct 47165 ATGAATAGCTTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCC 47106
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||| | || || ||||| |||||||| ||||| || ||||||
Sbjct 47105 GACACGATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 47046
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || |||||||||||||||| || || || | ||||| ||
Sbjct 47045 CAGCGACTGATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAAC 46986
Query 27586 GTCCAAAAGG 27595
|||| ||||
Sbjct 46985 ATCCAGAAGG 46976
>seq2295
Length=74258
Score = 113 bits (124), Expect = 5e-20
Identities = 198/286 (69%), Gaps = 7/286 (2%)
Strand=Plus/Plus
Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043
||||| |||||||| |||||| ||||| || ||||| ||| |||||| || || |
Sbjct 69479 GACGGTTTCAAGCCTGGACAGCGTAAGGTTATGTACGCTTGCTTCAAGAGAAATCTCACT 69538
Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103
| ||||||||||| | | || | || ||||| |||| | ||||| || || |||
Sbjct 69539 CGAGACATGAAGGTTGTCGAATTGGCTGGGTACGTCTCAGAAAACACGGCATACCATCAC 69598
Query 32104 GGCGAGGCGTC---GCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160
||||| || || || |||| || ||| | || |||||||||||||| || ||
Sbjct 69599 GGCGAAGCTTCCATGCACCAG---ACTATTATTGGTCTCGCTCAGAACTTTGTGGGATCA 69655
Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220
|| ||| | |||| | ||||| ||| || || | | || || ||||| |
Sbjct 69656 AACAACATCAACTGCTTGGAGCCCAGCGGATCTTTCGGTAGTAGACTTGCTGGTGGTAGT 69715
Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC-ACCTTCG 32265
|||||||| || | |||||||| |||||| | ||| | ||||||
Sbjct 69716 GATGCTGCCAGTCCTCGTTACATTTTCACCAGACTCTCTCCCTTCG 69761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570286368545520
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