Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2637 205 1e-47 seq332 194 2e-44 seq507 145 9e-30 seq1884 136 5e-27 seq2295 113 5e-20 >seq2637 Length=17558 Score = 205 bits (226), Expect = 1e-47 Identities = 774/1198 (65%), Gaps = 31/1198 (3%) Strand=Plus/Plus Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622 |||| ||| |||||||| ||| | | ||||| || || || || ||||||| |||||| Sbjct 7660 CCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAAGCTCA 7719 Query 80623 CACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 ||| | | | || ||||| || ||| ||| |||| |||| | | || Sbjct 7720 ATCGAAGCGGTCAAAGCAGCGTGGTAGATGGTCTCGAAGATTTGGATGTTGAG---GTGC 7776 Query 80683 ---GCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGA 80739 |||| || |||||| | | | | || ||| | || || || || ||| Sbjct 7777 TTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAGCATCTGCAAGACCTTGA 7836 Query 80740 ACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG-CTCGGCCTCCGGAATTGGGTA 80798 || || | ||| || || ||||| || ||| ||| |||| |||| |||| |||||| Sbjct 7837 ACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCGTCTCG-CCTCGGGAACTGGGTA 7895 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AACAACCCGTGTAACATCATGAA 80857 |||| ||||||||| ||| | ||| | || ||| || | || || || | Sbjct 7896 GTAGTTGATATCGATGATTTTGTTTAAGTT-CTTGACAACGACTTGGCAGACCTCGTGGA 7954 Query 80858 GTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACG 80911 | || ||||||| || | |||| | ||| | | ||| || ||||| | Sbjct 7955 GCTTGGCAAAGTCGTATGTGCCGTTGTTCATGTCAACATAAGTCGGGAGCGCAAGGGAGG 8014 Query 80912 CCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAAT 80971 ||| ||||| || || | ||| || | | |||| || ||||| |||||||| | Sbjct 8015 CCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTTCAGTGCACAAGT 8074 Query 80972 TAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 |||| ||| || ||||| ||||| |||||||| ||| |||||| || ||||| Sbjct 8075 TAGAG--CTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTT 8132 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 |||| |||| | ||| | ||||||||| || | || |||||||| || ||||| || Sbjct 8133 GTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTT 8192 Query 81090 GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTC 81149 | ||||||| |||||| ||||| || | | ||||| |||| | || Sbjct 8193 TTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCCTC 8252 Query 81150 GAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA 81209 ||||| |||||| | |||| | | | |||||||| || |||||||| || ||| Sbjct 8253 GAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCA 8312 Query 81210 GTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAG 81269 |||| || ||||| ||| ||||||||| || || ||||| | ||| ||| || Sbjct 8313 CTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAAGAG 8372 Query 81270 GTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGA 81328 ||||| ||| || | ||||| | || ||||| |||| || || | || | | Sbjct 8373 ATCGCGAGCA-CGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAA 8431 Query 81329 TGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCT 81385 || || ||||||||||| || || | |||| | || ||| |||||||| Sbjct 8432 CATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCT 8491 Query 81386 GGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACT 81445 ||| || || | ||||| ||| || || |||||||| || | || || | || | Sbjct 8492 GGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGAGT 8551 Query 81446 GACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGA 81505 ||||| ||||| |||| | || |||| || | || ||| ||||| | Sbjct 8552 TTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACCAA 8611 Query 81506 TGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGA 81565 | || || | ||| |||||| ||||| || | ||| || || || || || | Sbjct 8612 TACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAA 8671 Query 81566 TGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CC 81623 ||||||||| |||||||| | | ||| || || | |||| || | | | | || Sbjct 8672 TGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGA--GCCTGTGGCGTACC 8729 Query 81624 GGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGT 81683 || || ||||| || | || ||| |||| || | ||||||||| || || || Sbjct 8730 AGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGT 8789 Query 81684 TTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740 || | | || | | ||||| |||||||| || || | || || ||||||| ||| Sbjct 8790 CTCAATAGCAGCCTCG-ATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATCAT 8846 >seq332 Length=18159 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || |||||||||||||| |||||||| |||||||| Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||| || |||||||| ||||| || || ||| Sbjct 2182 GATACCATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCAG 2123 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || |||||||| ||||||| |||||| | | ||||| || Sbjct 2122 CAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAAC 2063 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| || | ||| | ||||| |||||||| Sbjct 2062 ATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGTCTCCGCGGTGG 2016 Score = 190 bits (210), Expect = 2e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || || |||||||||||||| | |||| ||| | Sbjct 2458 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCGAC 2399 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| |||||||| |||||||| ||| | ||| Sbjct 2398 AATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAACGTTTGATT 2339 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || |||||||| ||||| | || ||||| | |||||||| |||| ||||| Sbjct 2338 TTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTATAACATCCAGAAGGAG 2279 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| || | ||||| || ||||| Sbjct 2278 TCCACCCTTCATCTCGTTCTCCGTCTCCGTGGTGG 2244 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || |||||||||||||| | || || ||||| Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || |||||||| ||||||||||| || || |||||| Sbjct 1954 GACACGATTGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCAG 1895 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||||||||| || ||||||| ||||| | ||| || || || Sbjct 1894 CAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGC-GATTACAA 1836 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||||||||| || ||||| || | ||| | ||||| || ||||| ||| Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGTCTCCGTGGTGGTCAA 1784 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || ||||| || ||||| | || | ||| | ||| | ||| | Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| |||||||| ||||| || || || || || ||||| ||| Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | ||| || || | ||||| || | || ||||| ||||||||||| Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | |||||||| || || Sbjct 2549 CTTGTTCTCCGTCTTCGTGGCGG 2527 >seq507 Length=44608 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| | || | ||| | ||| | ||| | Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| || || || || || ||| Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||||| ||||| || | ||||| || |||| ||||| ||||| || || Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 34525 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || ||||||||||| Sbjct 34524 TTGGTTCTCCGCCTTCGCGGTGG 34502 >seq1884 Length=68653 Score = 136 bits (150), Expect = 5e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | | ||| |||||||| ||||| |||||||| || ||| | ||||| |||||| Sbjct 47165 ATGAATAGCTTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCC 47106 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || ||||| |||||||| ||||| || |||||| Sbjct 47105 GACACGATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 47046 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||||||||||||| || || || | ||||| || Sbjct 47045 CAGCGACTGATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAAC 46986 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 46985 ATCCAGAAGG 46976 >seq2295 Length=74258 Score = 113 bits (124), Expect = 5e-20 Identities = 198/286 (69%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 ||||| |||||||| |||||| ||||| || ||||| ||| |||||| || || | Sbjct 69479 GACGGTTTCAAGCCTGGACAGCGTAAGGTTATGTACGCTTGCTTCAAGAGAAATCTCACT 69538 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | ||||||||||| | | || | || ||||| |||| | ||||| || || ||| Sbjct 69539 CGAGACATGAAGGTTGTCGAATTGGCTGGGTACGTCTCAGAAAACACGGCATACCATCAC 69598 Query 32104 GGCGAGGCGTC---GCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160 ||||| || || || |||| || ||| | || |||||||||||||| || || Sbjct 69599 GGCGAAGCTTCCATGCACCAG---ACTATTATTGGTCTCGCTCAGAACTTTGTGGGATCA 69655 Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 || ||| | |||| | ||||| ||| || || | | || || ||||| | Sbjct 69656 AACAACATCAACTGCTTGGAGCCCAGCGGATCTTTCGGTAGTAGACTTGCTGGTGGTAGT 69715 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC-ACCTTCG 32265 |||||||| || | |||||||| |||||| | ||| | |||||| Sbjct 69716 GATGCTGCCAGTCCTCGTTACATTTTCACCAGACTCTCTCCCTTCG 69761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570286368545520