Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq332 118 9e-22 >seq332 Length=18159 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| |||| ||||||||||| || | || Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || |||||||| || || ||||| || || ||||| Sbjct 2182 GATACCATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCAG 2123 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||| | || || | ||| | ||||| |||||| Sbjct 2122 CAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAAC 2063 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 2062 ATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGTCTCCGCGGTGGTAT 2013 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| |||||| ||||||| | ||||| || | || Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| ||| ||||| || || || || || ||||| || || Sbjct 1954 GACACGATTGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCAG 1895 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 ||||| | || | || || || || |||| || | || |||| ||||||||| Sbjct 1894 CAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGC-CGTACGTTGAGCGATTACAA 1836 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||| || | || ||||| | ||| | || ||||| Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGTCTCCGTGGTGG 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434900073625920