Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1217 105 6e-18 >seq1217 Length=16346 Score = 105 bits (116), Expect = 6e-18 Identities = 324/495 (65%), Gaps = 42/495 (8%) Strand=Plus/Plus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACA-AG-CGGGGGTTCCCATCTC 34385 ||||||||||| | |||| || || || | ||| ||| || ||| |||||||| Sbjct 12800 AAGATCTGGGATGGCAACGGATCACGCGAATATCTCGACTCAGTCGGCCTTTCCCATC-- 12857 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | | | |||||| |||| || |||||||| ||||||||| |||| ||||| || || | Sbjct 12858 GTGCCGTCGGCGACCTGGGACCAGTCTACGGCTTCCAGTGGCGACATTTTGGTGCCGAAT 12917 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTG-CAGTACGTGAT 34503 || | | ||| || |||||||| ||||| |||| | |||||| || ||| | || || Sbjct 12918 AT-GTCGACGCGCAGACGGACTATACGGGAAAGGGTGTTGACCAGTTGGCAG-AGGTTAT 12975 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||| ||||| || || |||| | || ||| | | |||| |||||||| || Sbjct 12976 TCACAAGCTGAAGAACAATCCCTATGATCGCAGAATCATTCTCAGCGCATGGAACCCCAA 13035 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT----- 34617 ||| | || ||||| | || || ||||| | | ||| ||||||||||| Sbjct 13036 AGATATGAAACTAATGGCTTTGCCACCTTGCCATATGTT-TGCGCAATTCTACGTTTCGT 13094 Query 34618 -------------------------CGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAAC 34652 || ||| ||| | ||| |||||||||||| || | Sbjct 13095 TTCCAAAGAGTGAGAGTGGAGAGAGCGGGAAGGGGCACCTGCACTGCCAGCTCTACCAGC 13154 Query 34653 GATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGT 34712 | | || ||||| | || || || ||||| || || ||||| ||||| || ||| Sbjct 13155 GGAGTTGCGATATGGGCCTTGGTGTCCCATTCAATATCGCCAGTTATGCTCTCCTGACGC 13214 Query 34713 ACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGC-TGGTGCATACGTTGGGGGAT 34771 | ||| | |||||||| ||| | || | ||| || | | | | ||||| |||| || Sbjct 13215 ATATGCTTGCTCATGT-GTGCGATTTGGTCCCAGGCACCTTTATACATACCATGGGTGAC 13273 Query 34772 GCGCATATCTACCTG 34786 || || |||| ||| Sbjct 13274 GCACACGTCTATCTG 13288 Score = 105 bits (116), Expect = 6e-18 Identities = 324/495 (65%), Gaps = 42/495 (8%) Strand=Plus/Minus Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCA-GCTCCCCAGGAACCAACCCCACGA 6617 ||| |||| || || || |||| ||||| | | | | || ||| | || | ||| | Sbjct 13288 CAGATAGACGTGTGCGTCACCCATGGTATGTATAAAGGTGCCTGGGACCAAATCGCAC-A 13230 Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677 ||||||| | ||| | ||| || ||||| ||||| || || ||||| || || || | | Sbjct 13229 CATGAGCAAGCATATGCGTCAGGAGAGCATAACTGGCGATATTGAATGGGACACCAAGGC 13170 Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG---------- 6727 |||| || | || || |||||||||||| ||| | ||| ||| || Sbjct 13169 CCATATCGCAACTCCGCTGGTAGAGCTGGCAGTGCAGGTGCCCCTTCCCGCTCTCTCCAC 13110 Query 6728 --------------------ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCC 6766 ||||||||||| ||| | | ||||| || || | ||| Sbjct 13109 TCTCACTCTTTGGAAACGAAACGTAGAATTGCGCA-AACATATGGCAAGGTGGCAAAGCC 13051 Query 6767 ATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTC 6826 || || | ||| || |||||||| |||| | | ||| || | |||| || || Sbjct 13050 ATTAGTTTCATATCTTTGGGGTTCCATGCGCTGAGAATGATTCTGCGATCATAGGGATTG 12991 Query 6827 CGCTTCAAGGTGTCGATCACGTACTG-CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG- 6884 ||||| ||| || || | ||| || |||||| | |||| ||||| |||||||| Sbjct 12990 TTCTTCAGCTTGTGAATAACCT-CTGCCAACTGGTCAACACCCTTTCCCGTATAGTCCGT 12932 Query 6885 CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCA 6944 || ||| | | ||| || || ||||| |||| ||||||||| |||||||| || |||| Sbjct 12931 CTGCGCGTCGAC-ATATTCGGCACCAAAATGTCGCCACTGGAAGCCGTAGACTGGTCCCA 12873 Query 6945 AGTCGCCCTCCTCCCGAGATGGGAACCCCCG-CT-TGTCCAGAAAGTCTCGAGACCCGTG 7002 |||||| | | | |||||||| ||| || ||| ||| | || || || |||| Sbjct 12872 GGTCGCCGACGGCAC--GATGGGAAAGGCCGACTGAGTCGAGATATTCGCGTGATCCGTT 12815 Query 7003 AGCGTCCCAGATCTT 7017 | ||||||||||| Sbjct 12814 GCCATCCCAGATCTT 12800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448243511343120