Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1217 105 6e-18
>seq1217
Length=16346
Score = 105 bits (116), Expect = 6e-18
Identities = 324/495 (65%), Gaps = 42/495 (8%)
Strand=Plus/Plus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACA-AG-CGGGGGTTCCCATCTC 34385
||||||||||| | |||| || || || | ||| ||| || ||| ||||||||
Sbjct 12800 AAGATCTGGGATGGCAACGGATCACGCGAATATCTCGACTCAGTCGGCCTTTCCCATC-- 12857
Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445
| | | |||||| |||| || |||||||| ||||||||| |||| ||||| || || |
Sbjct 12858 GTGCCGTCGGCGACCTGGGACCAGTCTACGGCTTCCAGTGGCGACATTTTGGTGCCGAAT 12917
Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTG-CAGTACGTGAT 34503
|| | | ||| || |||||||| ||||| |||| | |||||| || ||| | || ||
Sbjct 12918 AT-GTCGACGCGCAGACGGACTATACGGGAAAGGGTGTTGACCAGTTGGCAG-AGGTTAT 12975
Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563
||| ||||| || || |||| | || ||| | | |||| |||||||| ||
Sbjct 12976 TCACAAGCTGAAGAACAATCCCTATGATCGCAGAATCATTCTCAGCGCATGGAACCCCAA 13035
Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT----- 34617
||| | || ||||| | || || ||||| | | ||| |||||||||||
Sbjct 13036 AGATATGAAACTAATGGCTTTGCCACCTTGCCATATGTT-TGCGCAATTCTACGTTTCGT 13094
Query 34618 -------------------------CGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAAC 34652
|| ||| ||| | ||| |||||||||||| || |
Sbjct 13095 TTCCAAAGAGTGAGAGTGGAGAGAGCGGGAAGGGGCACCTGCACTGCCAGCTCTACCAGC 13154
Query 34653 GATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGT 34712
| | || ||||| | || || || ||||| || || ||||| ||||| || |||
Sbjct 13155 GGAGTTGCGATATGGGCCTTGGTGTCCCATTCAATATCGCCAGTTATGCTCTCCTGACGC 13214
Query 34713 ACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGC-TGGTGCATACGTTGGGGGAT 34771
| ||| | |||||||| ||| | || | ||| || | | | | ||||| |||| ||
Sbjct 13215 ATATGCTTGCTCATGT-GTGCGATTTGGTCCCAGGCACCTTTATACATACCATGGGTGAC 13273
Query 34772 GCGCATATCTACCTG 34786
|| || |||| |||
Sbjct 13274 GCACACGTCTATCTG 13288
Score = 105 bits (116), Expect = 6e-18
Identities = 324/495 (65%), Gaps = 42/495 (8%)
Strand=Plus/Minus
Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCA-GCTCCCCAGGAACCAACCCCACGA 6617
||| |||| || || || |||| ||||| | | | | || ||| | || | ||| |
Sbjct 13288 CAGATAGACGTGTGCGTCACCCATGGTATGTATAAAGGTGCCTGGGACCAAATCGCAC-A 13230
Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677
||||||| | ||| | ||| || ||||| ||||| || || ||||| || || || | |
Sbjct 13229 CATGAGCAAGCATATGCGTCAGGAGAGCATAACTGGCGATATTGAATGGGACACCAAGGC 13170
Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG---------- 6727
|||| || | || || |||||||||||| ||| | ||| ||| ||
Sbjct 13169 CCATATCGCAACTCCGCTGGTAGAGCTGGCAGTGCAGGTGCCCCTTCCCGCTCTCTCCAC 13110
Query 6728 --------------------ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCC 6766
||||||||||| ||| | | ||||| || || | |||
Sbjct 13109 TCTCACTCTTTGGAAACGAAACGTAGAATTGCGCA-AACATATGGCAAGGTGGCAAAGCC 13051
Query 6767 ATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTC 6826
|| || | ||| || |||||||| |||| | | ||| || | |||| || ||
Sbjct 13050 ATTAGTTTCATATCTTTGGGGTTCCATGCGCTGAGAATGATTCTGCGATCATAGGGATTG 12991
Query 6827 CGCTTCAAGGTGTCGATCACGTACTG-CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG- 6884
||||| ||| || || | ||| || |||||| | |||| ||||| ||||||||
Sbjct 12990 TTCTTCAGCTTGTGAATAACCT-CTGCCAACTGGTCAACACCCTTTCCCGTATAGTCCGT 12932
Query 6885 CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCA 6944
|| ||| | | ||| || || ||||| |||| ||||||||| |||||||| || ||||
Sbjct 12931 CTGCGCGTCGAC-ATATTCGGCACCAAAATGTCGCCACTGGAAGCCGTAGACTGGTCCCA 12873
Query 6945 AGTCGCCCTCCTCCCGAGATGGGAACCCCCG-CT-TGTCCAGAAAGTCTCGAGACCCGTG 7002
|||||| | | | |||||||| ||| || ||| ||| | || || || ||||
Sbjct 12872 GGTCGCCGACGGCAC--GATGGGAAAGGCCGACTGAGTCGAGATATTCGCGTGATCCGTT 12815
Query 7003 AGCGTCCCAGATCTT 7017
| |||||||||||
Sbjct 12814 GCCATCCCAGATCTT 12800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448243511343120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |