Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq332 150 4e-31
seq507 134 3e-26
seq2637 120 7e-22
seq1884 111 4e-19
>seq332
Length=18159
Score = 150 bits (166), Expect = 4e-31
Identities = 152/198 (77%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || |||||||||||||||||||| || || ||||| || || | || ||
Sbjct 2532 ACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGT 2591
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| |||||||||||||| ||||||| ||
Sbjct 2592 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACC 2651
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || || || ||||||||||| | || || || ||
Sbjct 2652 CTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAG 2711
Query 211073 AGTGATCGTCTTTCCCGT 211090
||||| ||||| || ||
Sbjct 2712 GGTGATGGTCTTGCCAGT 2729
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || ||||| |||||||| || ||||||||||| || | ||||| | || ||
Sbjct 2259 AGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCC 2318
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || | ||||| ||||||||||||| || |||||||||
Sbjct 2319 TCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 2378
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || |||||||| || | |||||||| || ||||| |||
Sbjct 2379 TGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTC 2438
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 2439 TTGCCGGTGAGGGTCTTGAC 2458
Score = 143 bits (158), Expect = 6e-29
Identities = 161/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
||||| | ||| ||||| ||||| ||||||||||| ||||| | ||| || | |||||
Sbjct 1803 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAA-CGTACGGCCATC 1861
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
||||||||||| || || ||||| || || || |||||||| || | ||| ||||| ||
Sbjct 1862 CTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATC 1921
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||| |||||| || ||||| || || ||||| ||| || || || | || || ||
Sbjct 1922 CTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGT 1981
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| | |||||| ||||| | |||||
Sbjct 1982 CTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| ||||| ||||| ||||||||||| || || | | ||| | |||||
Sbjct 2031 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 2090
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || || || || || || || || || |||| || ||||| ||
Sbjct 2091 TCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCT 2150
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| |||||||| || ||| ||||| || |||||||| |||
Sbjct 2151 TGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTC 2210
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 2211 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
>seq507
Length=44608
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || | ||| || |||||||| || |||||||| || || | || ||
Sbjct 34508 CGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 34567
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || || |||||||| |||||||| ||||| || ||||| || || | ||
Sbjct 34568 CGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 34627
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || || || ||||||||||| | || ||||| ||
Sbjct 34628 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGG 34687
Query 211074 GTGATCGTCTTTCCCGT 211090
||||||||||| |||||
Sbjct 34688 GTGATCGTCTTGCCCGT 34704
>seq2637
Length=17558
Score = 120 bits (132), Expect = 7e-22
Identities = 196/281 (70%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144
|||| |||||| ||||||||||||| |||| ||||| ||||| ||||| ||
Sbjct 8092 CCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCA---TGCATCCTTGTAGAGCATGAATGGG 8148
Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204
|||| ||| | ||||||| |||| ||| | |||||||| || || || ||||
Sbjct 8149 TTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTC 8208
Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264
|| | || || || ||||||||||| | ||| || ||||||| || || |||
Sbjct 8209 TTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAG 8268
Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324
|||||| | | || || |||||||||||| | ||| |||||| ||| | ||
Sbjct 8269 ACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCG 8328
Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|| || |||||||| || || | |||| | |||||||||
Sbjct 8329 ACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAA 8369
>seq1884
Length=68653
Score = 111 bits (122), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||| || | ||||| || || ||||| || ||||| ||
Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 47037
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || || ||||| || |||| || ||||| ||||||||||| || || || |||
Sbjct 47038 AGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 47097
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| || || ||||| | |||||| ||||| || || |||||||| || ||
Sbjct 47098 ATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAA 47156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159101935138415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |