Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq332 150 4e-31 seq507 134 3e-26 seq2637 120 7e-22 seq1884 111 4e-19 >seq332 Length=18159 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||||||||| || || ||||| || || | || || Sbjct 2532 ACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGT 2591 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| |||||||||||||| ||||||| || Sbjct 2592 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACC 2651 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || ||||||||||| | || || || || Sbjct 2652 CTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAG 2711 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| ||||| || || Sbjct 2712 GGTGATGGTCTTGCCAGT 2729 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| |||||||| || ||||||||||| || | ||||| | || || Sbjct 2259 AGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCC 2318 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || | ||||| ||||||||||||| || ||||||||| Sbjct 2319 TCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 2378 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || |||||||| || | |||||||| || ||||| ||| Sbjct 2379 TGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTC 2438 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 2439 TTGCCGGTGAGGGTCTTGAC 2458 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 ||||| | ||| ||||| ||||| ||||||||||| ||||| | ||| || | ||||| Sbjct 1803 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAA-CGTACGGCCATC 1861 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||||||||| || || ||||| || || || |||||||| || | ||| ||||| || Sbjct 1862 CTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATC 1921 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| |||||| || ||||| || || ||||| ||| || || || | || || || Sbjct 1922 CTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGT 1981 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| ||||| | ||||| Sbjct 1982 CTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||| ||||| ||||||||||| || || | | ||| | ||||| Sbjct 2031 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 2090 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || || || || || || || || || |||| || ||||| || Sbjct 2091 TCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCT 2150 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||| || ||| ||||| || |||||||| ||| Sbjct 2151 TGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTC 2210 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 2211 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 >seq507 Length=44608 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| || |||||||| || |||||||| || || | || || Sbjct 34508 CGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 34567 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || || |||||||| |||||||| ||||| || ||||| || || | || Sbjct 34568 CGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 34627 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || || || ||||||||||| | || ||||| || Sbjct 34628 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGG 34687 Query 211074 GTGATCGTCTTTCCCGT 211090 ||||||||||| ||||| Sbjct 34688 GTGATCGTCTTGCCCGT 34704 >seq2637 Length=17558 Score = 120 bits (132), Expect = 7e-22 Identities = 196/281 (70%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||||| |||| ||||| ||||| ||||| || Sbjct 8092 CCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCA---TGCATCCTTGTAGAGCATGAATGGG 8148 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| ||| | ||||||| |||| ||| | |||||||| || || || |||| Sbjct 8149 TTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTC 8208 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | || || || ||||||||||| | ||| || ||||||| || || ||| Sbjct 8209 TTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAG 8268 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 |||||| | | || || |||||||||||| | ||| |||||| ||| | || Sbjct 8269 ACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCG 8328 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || |||||||| || || | |||| | ||||||||| Sbjct 8329 ACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAA 8369 >seq1884 Length=68653 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | ||||| || || ||||| || ||||| || Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 47037 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| || |||| || ||||| ||||||||||| || || || ||| Sbjct 47038 AGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 47097 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || || ||||| | |||||| ||||| || || |||||||| || || Sbjct 47098 ATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAA 47156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159101935138415