Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq332 86.0 5e-12 >seq332 Length=18159 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| || || |||||| | || || | || || Sbjct 1806 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCC 1865 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || || ||||||||||| |||||| | | ||| || ||| | Sbjct 1866 AGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGG-ATTCCCTCCTTATCC-T 1923 Query 39195 GATTTTCTGT-TTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | || ||| || ||||| || |||| || ||| | Sbjct 1924 GAATCTTTGACTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTC 1982 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||||| || ||||||||||||||||| Sbjct 1983 TTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429527952521723