Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq332 86.0 5e-12
>seq332
Length=18159
Score = 86.0 bits (94), Expect = 5e-12
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||| ||||| || || |||||| | || || | || ||
Sbjct 1806 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCC 1865
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || ||||| || || ||||||||||| |||||| | | ||| || ||| |
Sbjct 1866 AGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGG-ATTCCCTCCTTATCC-T 1923
Query 39195 GATTTTCTGT-TTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
|| | | || |||| ||| | || ||| || ||||| || |||| || ||| |
Sbjct 1924 GAATCTTTGACTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTC 1982
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||||| || |||||||||||||||||
Sbjct 1983 TTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429527952521723
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |