Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq332 149 1e-30
seq507 131 4e-25
>seq332
Length=18159
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||||||||| || || ||||||| ||||||||| ||| || | |||||
Sbjct 1803 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCC 1862
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| ||||| || ||||| || || || || ||||| ||
Sbjct 1863 TCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCC 1922
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| |||||| ||| || || || ||||| |||| || || || || || || |||
Sbjct 1923 TGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTC 1982
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||||||||| || | || | ||||||
Sbjct 1983 TTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 140 bits (154), Expect = 8e-28
Identities = 151/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || |||||||| |||||||| || || || | ||||| || | | |||
Sbjct 2532 ACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGT 2591
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || ||||||||||| || ||||||||
Sbjct 2592 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACC 2651
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| ||| ||||||||||| || || || || |
Sbjct 2652 CTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAG 2711
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
||||| |||||||| ||||
Sbjct 2712 GGTGATGGTCTTGCCAGTCA 2731
>seq507
Length=44608
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || | |||||| ||||| || || |||| ||||| |||| | |||
Sbjct 34508 CGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 34567
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || ||||| || |||||||| || || || ||||| || || || ||
Sbjct 34568 CGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 34627
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| ||| ||||||||||| || ||||| || |
Sbjct 34628 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGG 34687
Query 225673 GTGATCGTCTTGCCCGT 225689
|||||||||||||||||
Sbjct 34688 GTGATCGTCTTGCCCGT 34704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192479693459474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |