Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1217 87.8 1e-12 >seq1217 Length=16346 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 ||||| || ||||| |||||||| |||||||| ||||| |||| ||| || | ||| Sbjct 13309 CTTCAACGCATCCACATGATCCAGATAGACGTGTGCGTCACCCATGGTATGTATAAAGGT 13250 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 || || | | || || ||||| | ||| | ||| ||||||| || |||||||| Sbjct 13249 GCCTGGGACCAAATCGCACACATGAGCAAGCATATGCGTCAGGAGAGCATAACTGGCGAT 13190 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 || || || || || || ||||| || | || |||||||||||| || Sbjct 13189 ATTGAATGGGACACCAAGGCCCATATCGCAACTCCGCTGGTAGAGCTGGCA 13139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369492019143101