Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 178 2e-39
>seq2637
Length=17558
Score = 178 bits (196), Expect = 2e-39
Identities = 1110/1768 (63%), Gaps = 31/1768 (2%)
Strand=Plus/Plus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| || || || || | ||| || | ||||||| || |||||||| ||||| || |
Sbjct 7099 GTGAATTGGATAGGGGCAGAAGCAGCCATTGTACGGAGGTAGTACATGCCAGTCTTCAAT 7158
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
|||| |||| || ||| |||||||| || | ||| | ||||| ||
Sbjct 7159 CCCAACTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGTTGGATCCTTCATG 7218
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961
|| || ||||||||||| |||||||||| | || || | || || ||||| | | |
Sbjct 7219 TGGATGTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCCATCTGAACA 7278
Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021
|| || ||||| || ||||||| || ||| | | |||||||||| |||| | |
Sbjct 7279 ATAGTTCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATG 7338
Query 77022 TTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078
|||| | || || |||||||| ||||| | || || ||||| || | ||| |
Sbjct 7339 TTTGGAATGTTCTGGATGGAACCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 7398
Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138
|| | | | ||| || | | | | ||| || || | || || || |||
Sbjct 7399 CAGAGGCCCATATCTACCAAGTCCTTCAACAACCAAGGGTTGACGACCTGGAACTCGCCA 7458
Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198
| | || | |||| |||||| || || ||||| || | | || ||| ||
Sbjct 7459 GCAAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGAAGCCA 7518
Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258
| ||| ||| || |||||||||||||| || || | ||||| || | || ||||
Sbjct 7519 AGAATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCA 7578
Query 77259 TGTGTTCTGAT-TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317
||| |||| | | ||| || || | ||| ||||| ||||| | || | |
Sbjct 7579 TGTTGCTTGATCTGTTGCTTCAAGCTA-TCCCAGTCCCAGAGATCGGTGGGGGTGATGCC 7637
Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377
||| || || ||||| || || || || || || | |||||| ||||||||
Sbjct 7638 CCATAGGTCATATTGAAGCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGG 7697
Query 77378 TCCTTCTGTTTCAGCTAGTTCA--CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCG 77435
|| || | | || || ||| | | || | ||| || ||| || || || |||
Sbjct 7698 ACCATCGATCTTGGCAAGCTCAATCGAAGCGGT--CAAAGCAGCGTGGTAGATGGTCTCG 7755
Query 77436 AAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAAT 77494
|| || | | ||||| | |||| || ||| || || ||| | | | |
Sbjct 7756 AAGATTTGGATGTTGAGGTGCTTG-GCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAA 7814
Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554
|| |||||||| | || ||||| |||| |||| |||| || | |||
Sbjct 7815 GAAAGCATCTGCAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCG 7874
Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614
| | || || |||| || || || || || || || ||||| || | || | |||||
Sbjct 7875 TCTCGCCTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAAC 7934
Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTAT------AACAAA 77668
|||| || || | || || ||| || || | || | | |||| |
Sbjct 7935 GACTTGGCAGACCTCGTGGAGCTTGGCAAAGTCGTATGTGCCGTTGTTCATGTCAACATA 7994
Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATT 77727
| | || | || || | || || || || | ||| | | ||| | || |
Sbjct 7995 AGTCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCG-AAGAGTACT 8053
Query 77728 GTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCT 77787
| || || || || | ||| | | |||||| || || || | ||||||||||
Sbjct 8054 CCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCT 8113
Query 77788 TTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGA 77847
|| ||||||| ||||| || || || || || | ||||| || | || | ||||
Sbjct 8114 TTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 8173
Query 77848 TAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCT-CTCTCTTTC- 77905
|| || | ||| | | ||| | | |||| ||| | | | | ||| |||
Sbjct 8174 GGATGGAGTACCAAAGCTTTTGAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCT 8230
Query 77906 ---ATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962
| | ||| | |||| || || ||||| || | |||||| |||| ||||||||
Sbjct 8231 CGTACTTCTCGTACAGAGCC--TCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCA 8288
Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022
||||| |||||||| | | ||| || | | | || || || ||||| || |||||
Sbjct 8289 CTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATC 8348
Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082
|| ||||| | ||| || ||||| || | | | ||| || || || |||||
Sbjct 8349 GGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTT 8408
Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142
| || || || |||| | || ||| | |||||||| || || || || || | | |
Sbjct 8409 TCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGC 8468
Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202
|| || || || || || ||||| || | |||||| || ||||| || | |||| |||
Sbjct 8469 ACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAA 8528
Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCG 78262
||| |||| ||| ||||| || |||| || || |||| || || ||| | || ||
Sbjct 8529 CATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACG 8588
Query 78263 AATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTT 78322
||| | ||| || || || ||||| || |||| || || | || || ||
Sbjct 8589 AATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTT 8648
Query 78323 CAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGA 78382
| || |||||||| || || || || || ||| |||||| | ||| || || |||
Sbjct 8649 GAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGA 8708
Query 78383 CATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTT 78442
| ||| || || || || ||| | ||| || |||||||| || || | ||
Sbjct 8709 AAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTT 8768
Query 78443 TTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTA 78501
|| | | |||||||| |||||||| | || || ||| || | || || || |
Sbjct 8769 GCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCG-TGGATGCCAA 8827
Query 78502 CCGCTACACGCATCAACATATGCTGAGG 78529
|||| || ||||| | |||||| |||||
Sbjct 8828 CCGCCACGCGCATAATCATATGTTGAGG 8855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694639528393440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |