Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2637 178 2e-39 >seq2637 Length=17558 Score = 178 bits (196), Expect = 2e-39 Identities = 1110/1768 (63%), Gaps = 31/1768 (2%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || || || || || | ||| || | ||||||| || |||||||| ||||| || | Sbjct 7099 GTGAATTGGATAGGGGCAGAAGCAGCCATTGTACGGAGGTAGTACATGCCAGTCTTCAAT 7158 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| |||| || ||| |||||||| || | ||| | ||||| || Sbjct 7159 CCCAACTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGTTGGATCCTTCATG 7218 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || ||||||||||| |||||||||| | || || | || || ||||| | | | Sbjct 7219 TGGATGTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCCATCTGAACA 7278 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 || || ||||| || ||||||| || ||| | | |||||||||| |||| | | Sbjct 7279 ATAGTTCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATG 7338 Query 77022 TTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 |||| | || || |||||||| ||||| | || || ||||| || | ||| | Sbjct 7339 TTTGGAATGTTCTGGATGGAACCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 7398 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 || | | | ||| || | | | | ||| || || | || || || ||| Sbjct 7399 CAGAGGCCCATATCTACCAAGTCCTTCAACAACCAAGGGTTGACGACCTGGAACTCGCCA 7458 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 | | || | |||| |||||| || || ||||| || | | || ||| || Sbjct 7459 GCAAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGAAGCCA 7518 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 | ||| ||| || |||||||||||||| || || | ||||| || | || |||| Sbjct 7519 AGAATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCA 7578 Query 77259 TGTGTTCTGAT-TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317 ||| |||| | | ||| || || | ||| ||||| ||||| | || | | Sbjct 7579 TGTTGCTTGATCTGTTGCTTCAAGCTA-TCCCAGTCCCAGAGATCGGTGGGGGTGATGCC 7637 Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377 ||| || || ||||| || || || || || || | |||||| |||||||| Sbjct 7638 CCATAGGTCATATTGAAGCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGG 7697 Query 77378 TCCTTCTGTTTCAGCTAGTTCA--CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCG 77435 || || | | || || ||| | | || | ||| || ||| || || || ||| Sbjct 7698 ACCATCGATCTTGGCAAGCTCAATCGAAGCGGT--CAAAGCAGCGTGGTAGATGGTCTCG 7755 Query 77436 AAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAAT 77494 || || | | ||||| | |||| || ||| || || ||| | | | | Sbjct 7756 AAGATTTGGATGTTGAGGTGCTTG-GCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAA 7814 Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 || |||||||| | || ||||| |||| |||| |||| || | ||| Sbjct 7815 GAAAGCATCTGCAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCG 7874 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 | | || || |||| || || || || || || || ||||| || | || | ||||| Sbjct 7875 TCTCGCCTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAAC 7934 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTAT------AACAAA 77668 |||| || || | || || ||| || || | || | | |||| | Sbjct 7935 GACTTGGCAGACCTCGTGGAGCTTGGCAAAGTCGTATGTGCCGTTGTTCATGTCAACATA 7994 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATT 77727 | | || | || || | || || || || | ||| | | ||| | || | Sbjct 7995 AGTCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCG-AAGAGTACT 8053 Query 77728 GTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCT 77787 | || || || || | ||| | | |||||| || || || | |||||||||| Sbjct 8054 CCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCT 8113 Query 77788 TTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGA 77847 || ||||||| ||||| || || || || || | ||||| || | || | |||| Sbjct 8114 TTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 8173 Query 77848 TAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCT-CTCTCTTTC- 77905 || || | ||| | | ||| | | |||| ||| | | | | ||| ||| Sbjct 8174 GGATGGAGTACCAAAGCTTTTGAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCT 8230 Query 77906 ---ATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 | | ||| | |||| || || ||||| || | |||||| |||| |||||||| Sbjct 8231 CGTACTTCTCGTACAGAGCC--TCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCA 8288 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||| |||||||| | | ||| || | | | || || || ||||| || ||||| Sbjct 8289 CTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATC 8348 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 || ||||| | ||| || ||||| || | | | ||| || || || ||||| Sbjct 8349 GGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTT 8408 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | || || || |||| | || ||| | |||||||| || || || || || | | | Sbjct 8409 TCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGC 8468 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 || || || || || || ||||| || | |||||| || ||||| || | |||| ||| Sbjct 8469 ACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAA 8528 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCG 78262 ||| |||| ||| ||||| || |||| || || |||| || || ||| | || || Sbjct 8529 CATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACG 8588 Query 78263 AATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTT 78322 ||| | ||| || || || ||||| || |||| || || | || || || Sbjct 8589 AATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTT 8648 Query 78323 CAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGA 78382 | || |||||||| || || || || || ||| |||||| | ||| || || ||| Sbjct 8649 GAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGA 8708 Query 78383 CATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTT 78442 | ||| || || || || ||| | ||| || |||||||| || || | || Sbjct 8709 AAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTT 8768 Query 78443 TTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTA 78501 || | | |||||||| |||||||| | || || ||| || | || || || | Sbjct 8769 GCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCG-TGGATGCCAA 8827 Query 78502 CCGCTACACGCATCAACATATGCTGAGG 78529 |||| || ||||| | |||||| ||||| Sbjct 8828 CCGCCACGCGCATAATCATATGTTGAGG 8855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694639528393440