Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 214 3e-50
>seq2637
Length=17558
Score = 214 bits (236), Expect = 3e-50
Identities = 527/792 (67%), Gaps = 12/792 (2%)
Strand=Plus/Plus
Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413
|||||| ||||| || | |||||||||||| ||| |||| ||||| || || | ||
Sbjct 8085 GATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAA 8144
Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT 76473
|| |||| || || | || | |||| || || | ||| | | ||| || ||
Sbjct 8145 TGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGAT 8204
Query 76474 TATAGATTTGTATCGCTT---CTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCA 76528
|| ||| | ||| ||| | || || || | ||| | | || || || |||
Sbjct 8205 ---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCC--TCGAACTCA 8259
Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588
|| || | |||||| |||| ||||| || ||||| || ||||| | | |||||| |
Sbjct 8260 TCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCG 8319
Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648
| | || || || ||||| || ||||| || ||||| | ||| || ||||| ||
Sbjct 8320 TTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGA 8379
Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708
| | | ||| || || || |||||| || || ||| |||| | || ||| |
Sbjct 8380 GCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCG 8439
Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768
|||||||| || || || || || | | |||| || || || || || ||||| || | |
Sbjct 8440 TGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAACA 8499
Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828
||||| |||||||| || | |||| |||||| |||| ||| ||||| || | || ||
Sbjct 8500 TATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTG 8559
Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888
|| |||| || || ||| |||||||| | || ||| || || |||||
Sbjct 8560 GTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCCC 8619
Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948
|| | || || || | |||||| || | ||||| |||||||| || || |||||
Sbjct 8620 GCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCT 8679
Query 76949 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAC 77008
||| |||||| | ||| || || ||| | ||| || || || || |||
Sbjct 8680 TCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAG 8739
Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068
| ||| || |||||||||||||| | || || | | |||||||| |||||| |
Sbjct 8740 AGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCA 8799
Query 77069 GCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127
|| || |||||| || | || || || || || || ||||| | |||||| ||||| ||
Sbjct 8800 GCCTCGATATCCTCACCG-TGGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGCG 8858
Query 77128 TTCTACAGTCTT 77139
|| || ||||
Sbjct 8859 CTCAGCAATCTT 8870
Score = 91.5 bits (100), Expect = 2e-13
Identities = 187/276 (68%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431
|||| ||||| || || || | || || | ||||||| || |||||||| ||||| |
Sbjct 7094 CAACAGTGAATTGGATAGGGGCAGAAGCAGCCATTGTACGGAGGTAGTACATGCCAGTCT 7153
Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491
| | |||| |||| || ||| |||||||| || | ||| | |||||
Sbjct 7154 TCAATCCCAACTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGTTGGATCCT 7213
Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551
|| || || ||||||||||| |||||||||| | || || | || || ||||| |
Sbjct 7214 TCATGTGGATGTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCCATCT 7273
Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611
| ||| || ||||| || ||||||| || ||| | | |||||||||| |||
Sbjct 7274 GAACAATAGTTCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTG 7333
Query 75612 GAAGATTTG---TATTTTGAATGGATCCGCCATCAG 75644
| | |||| | || || ||||| || |||||||
Sbjct 7334 GGATGTTTGGAATGTTCTGGATGGAACCCCCATCAG 7369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712904358726720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |