Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2637 214 3e-50 >seq2637 Length=17558 Score = 214 bits (236), Expect = 3e-50 Identities = 527/792 (67%), Gaps = 12/792 (2%) Strand=Plus/Plus Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413 |||||| ||||| || | |||||||||||| ||| |||| ||||| || || | || Sbjct 8085 GATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAA 8144 Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT 76473 || |||| || || | || | |||| || || | ||| | | ||| || || Sbjct 8145 TGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGAT 8204 Query 76474 TATAGATTTGTATCGCTT---CTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCA 76528 || ||| | ||| ||| | || || || | ||| | | || || || ||| Sbjct 8205 ---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCC--TCGAACTCA 8259 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || || | |||||| |||| ||||| || ||||| || ||||| | | |||||| | Sbjct 8260 TCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCG 8319 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 | | || || || ||||| || ||||| || ||||| | ||| || ||||| || Sbjct 8320 TTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGA 8379 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 | | | ||| || || || |||||| || || ||| |||| | || ||| | Sbjct 8380 GCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCG 8439 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 |||||||| || || || || || | | |||| || || || || || ||||| || | | Sbjct 8440 TGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAACA 8499 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 ||||| |||||||| || | |||| |||||| |||| ||| ||||| || | || || Sbjct 8500 TATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTG 8559 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 || |||| || || ||| |||||||| | || ||| || || ||||| Sbjct 8560 GTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCCC 8619 Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 || | || || || | |||||| || | ||||| |||||||| || || ||||| Sbjct 8620 GCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCT 8679 Query 76949 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAC 77008 ||| |||||| | ||| || || ||| | ||| || || || || ||| Sbjct 8680 TCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAG 8739 Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068 | ||| || |||||||||||||| | || || | | |||||||| |||||| | Sbjct 8740 AGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCA 8799 Query 77069 GCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 || || |||||| || | || || || || || || ||||| | |||||| ||||| || Sbjct 8800 GCCTCGATATCCTCACCG-TGGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGCG 8858 Query 77128 TTCTACAGTCTT 77139 || || |||| Sbjct 8859 CTCAGCAATCTT 8870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/276 (68%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| ||||| || || || | || || | ||||||| || |||||||| ||||| | Sbjct 7094 CAACAGTGAATTGGATAGGGGCAGAAGCAGCCATTGTACGGAGGTAGTACATGCCAGTCT 7153 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | | |||| |||| || ||| |||||||| || | ||| | ||||| Sbjct 7154 TCAATCCCAACTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGTTGGATCCT 7213 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 || || || ||||||||||| |||||||||| | || || | || || ||||| | Sbjct 7214 TCATGTGGATGTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCCATCT 7273 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 | ||| || ||||| || ||||||| || ||| | | |||||||||| ||| Sbjct 7274 GAACAATAGTTCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTG 7333 Query 75612 GAAGATTTG---TATTTTGAATGGATCCGCCATCAG 75644 | | |||| | || || ||||| || ||||||| Sbjct 7334 GGATGTTTGGAATGTTCTGGATGGAACCCCCATCAG 7369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712904358726720