Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq332 132 1e-25
seq2637 96.9 8e-15
seq507 93.3 1e-13
seq1884 84.2 5e-11
>seq332
Length=18159
Score = 132 bits (146), Expect = 1e-25
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | || ||||||||||| |||||||||||||| |||| || || | |||||
Sbjct 2031 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 2090
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || || || || | |||||| |||| | || || ||||| |
Sbjct 2091 TCAAGTTGCTTT--CCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTAT 2148
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
||||||| || || || | || | | | ||||| ||| ||||||||||| ||||
Sbjct 2149 CTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAG 2208
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||| ||||| ||||||| ||||||
Sbjct 2209 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | || ||||||||||| |||||||||||||||||| || || | |||||
Sbjct 1803 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCC 1862
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 1863 TCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCC 1922
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| ||| ||||| | || | |||| || ||| ||||| | ||||||||
Sbjct 1923 TGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTC 1982
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||||| | |||||| || |||| |||||
Sbjct 1983 TTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
>seq2637
Length=17558
Score = 96.9 bits (106), Expect = 8e-15
Identities = 194/283 (69%), Gaps = 6/283 (2%)
Strand=Plus/Minus
Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688
||||||||| | |||| | ||||| || |||||||| ||| || |||| ||||
Sbjct 8369 TTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGG 8310
Query 115689 AGCCTCTTTTGT--CCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTG 115746
| ||||| ||| |||||||| |||||| | | |||||| || ||| ||||| |
Sbjct 8309 A--CTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGTTCG 8252
Query 115747 AGAATCTTTACGAAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAA 115805
|| ||| ||||| | ||||||||| ||||| ||| | | ||| | | ||||| |||
Sbjct 8251 AGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCAA 8193
Query 115806 GACCTTTGGCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTAC 115865
| |||||| | ||||| | | || | ||| ||||| || || || |||
Sbjct 8192 AAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTAC 8133
Query 115866 AAAGATGCAGTTTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908
|| |||||| ||||||||||| || ||||| | ||||
Sbjct 8132 AAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTA 8090
>seq507
Length=44608
Score = 93.3 bits (102), Expect = 1e-13
Identities = 134/186 (72%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| |||| | ||| | ||||| || |
Sbjct 34522 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGA 34580
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | ||||||||||| | ||| || ||||| || || |
Sbjct 34581 GTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGA 34640
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
| || |||||| | || | | ||| ||| | ||| || ||||| || || || ||
Sbjct 34641 TCTTGGACTTGACATTGTCGATGGTGTCGCTGGA--CTCCACCTCAAGGGTGATCGTCTT 34698
Query 152075 GCCCGT 152080
||||||
Sbjct 34699 GCCCGT 34704
>seq1884
Length=68653
Score = 84.2 bits (92), Expect = 5e-11
Identities = 129/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974
|| ||||||||||| || | | ||| | ||||| || || ||||| |||||||| |
Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTT--CCGGCGAAAA 47035
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| || | ||||||||||| | || || ||||| || || || || |||||| | |
Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | |||| || ||| || || | ||| || || ||||| || |||||||| ||||
Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155
Query 152095 AG 152096
||
Sbjct 47156 AG 47157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153770965397941
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |