Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq332 132 1e-25 seq2637 96.9 8e-15 seq507 93.3 1e-13 seq1884 84.2 5e-11 >seq332 Length=18159 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||||||||| |||||||||||||| |||| || || | ||||| Sbjct 2031 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 2090 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || || || | |||||| |||| | || || ||||| | Sbjct 2091 TCAAGTTGCTTT--CCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTAT 2148 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || || || | || | | | ||||| ||| ||||||||||| |||| Sbjct 2149 CTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAG 2208 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| ||||||| |||||| Sbjct 2209 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||||||||| |||||||||||||||||| || || | ||||| Sbjct 1803 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCC 1862 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | |||||| ||||| || Sbjct 1863 TCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCC 1922 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||||| | || | |||| || ||| ||||| | |||||||| Sbjct 1923 TGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTC 1982 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| | |||||| || |||| ||||| Sbjct 1983 TTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 >seq2637 Length=17558 Score = 96.9 bits (106), Expect = 8e-15 Identities = 194/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 ||||||||| | |||| | ||||| || |||||||| ||| || |||| |||| Sbjct 8369 TTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGG 8310 Query 115689 AGCCTCTTTTGT--CCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTG 115746 | ||||| ||| |||||||| |||||| | | |||||| || ||| ||||| | Sbjct 8309 A--CTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGTTCG 8252 Query 115747 AGAATCTTTACGAAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAA 115805 || ||| ||||| | ||||||||| ||||| ||| | | ||| | | ||||| ||| Sbjct 8251 AGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCAA 8193 Query 115806 GACCTTTGGCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTAC 115865 | |||||| | ||||| | | || | ||| ||||| || || || ||| Sbjct 8192 AAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTAC 8133 Query 115866 AAAGATGCAGTTTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908 || |||||| ||||||||||| || ||||| | |||| Sbjct 8132 AAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTA 8090 >seq507 Length=44608 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/186 (72%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 34522 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGA 34580 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | ||||||||||| | ||| || ||||| || || | Sbjct 34581 GTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGA 34640 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 | || |||||| | || | | ||| ||| | ||| || ||||| || || || || Sbjct 34641 TCTTGGACTTGACATTGTCGATGGTGTCGCTGGA--CTCCACCTCAAGGGTGATCGTCTT 34698 Query 152075 GCCCGT 152080 |||||| Sbjct 34699 GCCCGT 34704 >seq1884 Length=68653 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 || ||||||||||| || | | ||| | ||||| || || ||||| |||||||| | Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTT--CCGGCGAAAA 47035 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | ||||||||||| | || || ||||| || || || || |||||| | | Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| || ||| || || | ||| || || ||||| || |||||||| |||| Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155 Query 152095 AG 152096 || Sbjct 47156 AG 47157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153770965397941