Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq332 159 7e-34 seq1884 143 6e-29 seq507 129 1e-24 seq481 111 3e-19 >seq332 Length=18159 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | || || |||||||||||||| || Sbjct 1787 ACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCT 1846 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| ||||||||||| || || || || |||||||||| || || |||||| || Sbjct 1847 CAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGG 1906 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||||| || ||| | || || |||||||| | ||||| Sbjct 1907 GATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 1966 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| ||||||||||||||||| || || ||||| Sbjct 1967 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| || || ||||| |||| || | || || ||||||||||||||||| | Sbjct 2015 ACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 2074 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| ||||| || || ||||| || | ||| || || || | Sbjct 2075 CAAG-GTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGG 2133 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| |||||||| ||||| ||||| | || ||| | ||||| || || || | || | Sbjct 2134 GAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAA 2193 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| |||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 2194 CTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 136 bits (150), Expect = 8e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| || || |||||||| ||||| | Sbjct 2243 ACCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 2302 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| ||||| || ||||| || ||||||||||| |||||| || Sbjct 2303 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGG 2362 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || || | ||||| || || | || || Sbjct 2363 AATGCCCTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAAC 2422 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || ||||| ||||| || || | ||||| |||| Sbjct 2423 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | ||| || || || ||||||||||||| Sbjct 2526 ACCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 2585 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || || || ||||||| ||||||||||| || Sbjct 2586 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGG 2645 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || || ||||||| ||||| | ||||| Sbjct 2646 AATACCCTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGAC 2705 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||| || ||||| ||||| || |||| Sbjct 2706 TTCAAGGGTGATGGTCTTGCCAGTCA 2731 >seq1884 Length=68653 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| ||| |||||||||||||| ||||| || ||||| || ||| Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 47037 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| |||||||| || |||||||| | || || | ||| Sbjct 47038 AGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 47097 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || | |||||| ||||| || || | |||||| ||||| Sbjct 47098 ATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAA 47156 >seq507 Length=44608 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || |||| || | ||| || || |||||||||||||| | Sbjct 34501 ACCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 34560 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || ||||| ||||||| || || ||||| || Sbjct 34561 GAGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 34620 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| | || || Sbjct 34621 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCAC 34680 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||||||||| ||||| Sbjct 34681 CTCAAGGGTGATCGTCTTGCCCGT 34704 >seq481 Length=22500 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264 || ||| ||||||| |||| |||||||||| | |||| ||| |||||| ||||| Sbjct 2059 GAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCAATACATCGAG 2000 Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324 ||||| ||||||||| | | | || || || | |||||||| || || | ||| Sbjct 1999 TTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGTCTACAAGGTTACCAAC 1940 Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384 || |||| || |||||| ||| || ||| || || || ||||||||||| |||||| Sbjct 1939 CCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGT 1880 Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410 || | || || |||| ||||||| Sbjct 1879 GTTGGTGACTACCAAAAAGCCGGTGT 1854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046693990352634