Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq332 159 7e-34
seq1884 143 6e-29
seq507 129 1e-24
seq481 111 3e-19
>seq332
Length=18159
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | || || |||||||||||||| ||
Sbjct 1787 ACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCT 1846
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||| ||||||||||| || || || || |||||||||| || || |||||| ||
Sbjct 1847 CAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGG 1906
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||| || || ||||||| || ||| | || || |||||||| | |||||
Sbjct 1907 GATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 1966
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | || || ||||| ||||||||||||||||| || || |||||
Sbjct 1967 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 149 bits (164), Expect = 1e-30
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
|||||| || || ||||| |||| || | || || ||||||||||||||||| |
Sbjct 2015 ACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 2074
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || ||||||||||| ||||| || || ||||| || | ||| || || || |
Sbjct 2075 CAAG-GTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGG 2133
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| |||||||| ||||| ||||| | || ||| | ||||| || || || | || |
Sbjct 2134 GAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAA 2193
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| |||||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 2194 CTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 136 bits (150), Expect = 8e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || ||||| | ||| || || |||||||| ||||| |
Sbjct 2243 ACCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 2302
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| ||||| || ||||| || ||||||||||| |||||| ||
Sbjct 2303 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGG 2362
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || || | ||||| || || | || ||
Sbjct 2363 AATGCCCTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAAC 2422
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|| || ||||| ||||| || || | ||||| ||||
Sbjct 2423 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || || || | ||| || || || |||||||||||||
Sbjct 2526 ACCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 2585
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || || ||||||| ||||||||||| ||
Sbjct 2586 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGG 2645
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| || ||||| | || || ||||||| ||||| | |||||
Sbjct 2646 AATACCCTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGAC 2705
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
||| || ||||| ||||| || ||||
Sbjct 2706 TTCAAGGGTGATGGTCTTGCCAGTCA 2731
>seq1884
Length=68653
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||||| ||| |||||||||||||| ||||| || ||||| || |||
Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 47037
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| |||||||| || |||||||| | || || | |||
Sbjct 47038 AGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 47097
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| || | |||||| ||||| || || | |||||| |||||
Sbjct 47098 ATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAA 47156
>seq507
Length=44608
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 34501 ACCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 34560
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| ||||| || ||||| ||||||| || || ||||| ||
Sbjct 34561 GAGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 34620
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||| ||||| | || ||
Sbjct 34621 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCAC 34680
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||||||||| |||||
Sbjct 34681 CTCAAGGGTGATCGTCTTGCCCGT 34704
>seq481
Length=22500
Score = 111 bits (122), Expect = 3e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264
|| ||| ||||||| |||| |||||||||| | |||| ||| |||||| |||||
Sbjct 2059 GAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCAATACATCGAG 2000
Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324
||||| ||||||||| | | | || || || | |||||||| || || | |||
Sbjct 1999 TTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGTCTACAAGGTTACCAAC 1940
Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384
|| |||| || |||||| ||| || ||| || || || ||||||||||| ||||||
Sbjct 1939 CCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGT 1880
Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410
|| | || || |||| |||||||
Sbjct 1879 GTTGGTGACTACCAAAAAGCCGGTGT 1854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046693990352634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |