Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq332 114 9e-21
seq507 102 6e-17
seq1884 84.2 2e-11
>seq332
Length=18159
Score = 114 bits (126), Expect = 9e-21
Identities = 147/201 (73%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| ||| |||||| |||||||| || |||| ||| ||| |||| ||
Sbjct 2262 ACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCA 2321
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| || |||||||| ||||| || | ||| | || ||||| |||
Sbjct 2322 AGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 2381
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| ||| ||| || ||||| | || || ||||
Sbjct 2382 ATCTTGGACTTAACATTGT--CGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCT 2439
Query 44307 TTCCCGTGAGGGTCTTCACGA 44327
| || ||||||||||| ||||
Sbjct 2440 TGCCGGTGAGGGTCTTGACGA 2460
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || || |||||||||||||||||||||| | || | || |||
Sbjct 1806 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCC 1865
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| |||||||| || | || | || ||||| |||
Sbjct 1866 AGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGA 1925
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||| | ||| || || |||| ||||| |||||
Sbjct 1926 ATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTG 1985
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | ||||| || |||||||||||
Sbjct 1986 CCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 109 bits (120), Expect = 4e-19
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|||| ||| || || |||||||||||||||||| |||| | || | || | || ||
Sbjct 2034 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGT-ACGGCCATCCTC 2092
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| ||||| || ||||| || | |||||||||||| | || | || ||||| ||
Sbjct 2093 AAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTG 2152
Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | ||||| || | ||| || || || | || || ||||
Sbjct 2153 AATCTTCGACTT-AACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTCT 2211
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||||||||| |||||||| |||||
Sbjct 2212 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
>seq507
Length=44608
Score = 102 bits (112), Expect = 6e-17
Identities = 136/187 (73%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || ||| |||||| ||||||||||| |||| ||| || | || ||
Sbjct 34520 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 34579
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| ||||||| |||||||| || | || | || ||||| |||
Sbjct 34580 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 34639
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||||||| ||| |||||||| | || |||||||
Sbjct 34640 ATCTTGGACTTGACATTGT--CGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCT 34697
Query 44307 TTCCCGT 44313
| |||||
Sbjct 34698 TGCCCGT 34704
>seq1884
Length=68653
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/192 (70%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| || | || ||| | || || || ||||| ||||| || |
Sbjct 46976 CCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAA 47035
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||||| || || ||||||| || || ||||| || || || ||||| ||
Sbjct 47096 --CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 47153
Query 44326 GAAGATTTGCAT 44337
|||| | | |||
Sbjct 47154 GAAGCTATTCAT 47165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359975610131907
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |