Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq507 136 1e-26
seq332 122 2e-22
seq1884 120 7e-22
seq2637 95.1 3e-14
>seq507
Length=44608
Score = 136 bits (150), Expect = 1e-26
Identities = 143/187 (76%), Gaps = 1/187 (1%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || ||||||||||| |||||||| | ||||||||||| || |||||
Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||| ||||||||||| || || ||||||||||| ||
Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||| ||||| | ||||| |||| || ||| |||| || || || || || ||
Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA- 34526
Query 178125 CTTGTTT 178131
|||| ||
Sbjct 34525 CTTGGTT 34519
>seq332
Length=18159
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || |||||||| ||||| || | || |||||||
Sbjct 2460 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCG 2401
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || || || |||||||||||||| || || || ||||| ||||||||||| | |
Sbjct 2400 ACAATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAACGTTTGA 2341
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| |||||||| || || || || || || | || || |||| |||||| |||| || |
Sbjct 2340 TTTTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTATAACATCCAGAAGG 2281
Query 178111 AATCAACACTGCATCTTGTT 178130
| || || || ||||| |||
Sbjct 2280 AGTCCACCCTTCATCTCGTT 2261
Score = 120 bits (132), Expect = 7e-22
Identities = 138/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||| || || || | ||||||||||| || |||||
Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || || ||||||||||| ||||| || |||||||| || ||
Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | ||||| | || || ||| | || || || || || || ||
Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550
Query 178125 CTTGTT 178130
||||||
Sbjct 2549 CTTGTT 2544
Score = 118 bits (130), Expect = 3e-21
Identities = 150/205 (73%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || ||| | || || || || || || | || || || ||| |||
Sbjct 2011 CAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCGGAC 1952
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| |||||||||||| || || |||||||| || ||||||||
Sbjct 1951 ACGATTGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCAGCAG 1892
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || ||||| || ||||| | || | |||||| ||| ||
Sbjct 1891 CGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAACATC 1832
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| || || || || || ||||
Sbjct 1831 CAAAAGGAGTCTACTCTCCA-CTTG 1808
>seq1884
Length=68653
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || ||||| || || || || ||||| | ||||| || || ||||| |||
Sbjct 47156 TTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCCGACACGATC 47097
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| ||||| || || || || || ||||||||||| |||||
Sbjct 47096 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGACTG 47037
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|| ||||||||||| || ||||| ||||| | |||||| | || || ||| |||| ||
Sbjct 47036 ATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAA 46978
>seq2637
Length=17558
Score = 95.1 bits (104), Expect = 3e-14
Identities = 190/279 (68%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182
|||| ||| ||||||||||| || ||| ||||| ||||| ||||| || ||
Sbjct 8092 CCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTT 8151
Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTT 214242
|| |||| |||||| | || ||| | ||| || | ||| ||||| | |||
Sbjct 8152 CCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTG 8211
Query 214243 TTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGAC 214301
| | ||| ||||| || |||||||| || || |||| ||| || || |||||||||
Sbjct 8212 C-GACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGAC 8270
Query 214302 ATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGAC 214361
|||| | | || || ||| |||||||| | |||| |||| | | || | | |||
Sbjct 8271 ATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGAC 8330
Query 214362 TCTTTTCATGAAAAGGTCGGAAGTCCAGATTGCATAAAA 214400
| |||||||| || |||| | |||| | ||||| ||
Sbjct 8331 ACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAA 8369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203679209720974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |