Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq507 136 1e-26 seq332 122 2e-22 seq1884 120 7e-22 seq2637 95.1 3e-14 >seq507 Length=44608 Score = 136 bits (150), Expect = 1e-26 Identities = 143/187 (76%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || ||||||||||| |||||||| | ||||||||||| || ||||| Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||||||||| || || ||||||||||| || Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| | ||||| |||| || ||| |||| || || || || || || Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA- 34526 Query 178125 CTTGTTT 178131 |||| || Sbjct 34525 CTTGGTT 34519 >seq332 Length=18159 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||| ||||| || | || ||||||| Sbjct 2460 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCG 2401 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||||| || || || ||||| ||||||||||| | | Sbjct 2400 ACAATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAACGTTTGA 2341 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | |||||||| || || || || || || | || || |||| |||||| |||| || | Sbjct 2340 TTTTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTATAACATCCAGAAGG 2281 Query 178111 AATCAACACTGCATCTTGTT 178130 | || || || ||||| ||| Sbjct 2280 AGTCCACCCTTCATCTCGTT 2261 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| || || || | ||||||||||| || ||||| Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | ||||| | || || ||| | || || || || || || || Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550 Query 178125 CTTGTT 178130 |||||| Sbjct 2549 CTTGTT 2544 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || || || | || || || ||| ||| Sbjct 2011 CAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCGGAC 1952 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||| || || |||||||| || |||||||| Sbjct 1951 ACGATTGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCAGCAG 1892 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || ||||| || ||||| | || | |||||| ||| || Sbjct 1891 CGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAACATC 1832 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 1831 CAAAAGGAGTCTACTCTCCA-CTTG 1808 >seq1884 Length=68653 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || ||||| || || || || ||||| | ||||| || || ||||| ||| Sbjct 47156 TTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCCGACACGATC 47097 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| ||||| || || || || || ||||||||||| ||||| Sbjct 47096 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGACTG 47037 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||||||||| || ||||| ||||| | |||||| | || || ||| |||| || Sbjct 47036 ATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAA 46978 >seq2637 Length=17558 Score = 95.1 bits (104), Expect = 3e-14 Identities = 190/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182 |||| ||| ||||||||||| || ||| ||||| ||||| ||||| || || Sbjct 8092 CCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTT 8151 Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTT 214242 || |||| |||||| | || ||| | ||| || | ||| ||||| | ||| Sbjct 8152 CCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTG 8211 Query 214243 TTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGAC 214301 | | ||| ||||| || |||||||| || || |||| ||| || || ||||||||| Sbjct 8212 C-GACCCTTGCCCTCCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGAC 8270 Query 214302 ATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGAC 214361 |||| | | || || ||| |||||||| | |||| |||| | | || | | ||| Sbjct 8271 ATCAGCCAAGCCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGAC 8330 Query 214362 TCTTTTCATGAAAAGGTCGGAAGTCCAGATTGCATAAAA 214400 | |||||||| || |||| | |||| | ||||| || Sbjct 8331 ACGCTTCATGAATAGATCGGGAATCCACAAGGCATAGAA 8369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203679209720974