Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq507 143 2e-29
seq332 138 1e-27
>seq507
Length=44608
Score = 143 bits (158), Expect = 2e-29
Identities = 156/205 (76%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | |||| || || ||| ||||||||| ||||| |||||||||
Sbjct 34502 CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 34561
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||| |||||||||||||| ||||||||||| ||||||| |||
Sbjct 34562 AGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 34621
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||||| |||||||
Sbjct 34622 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGCTGGACTCCA 34679
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
|||| | || ||||| || |||||
Sbjct 34680 CCTCAAGGGTGATCGTCTTGCCCGT 34704
>seq332
Length=18159
Score = 138 bits (152), Expect = 1e-27
Identities = 163/218 (75%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || ||| ||||||||| |||||||||||||||
Sbjct 2244 CCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 2303
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || || |||||||||||||| |||| || || ||||| | |||
Sbjct 2304 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 2363
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || | | ||| | | | || ||||| ||||| ||
Sbjct 2364 ATGCCCTCCTTGTCC-TGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAAC 2422
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || || || || || ||||| ||||
Sbjct 2423 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460
Score = 132 bits (146), Expect = 4e-26
Identities = 157/208 (75%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || || || || ||| ||||||||||||||| ||||| |||
Sbjct 2527 CCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2586
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| |||||||| |||||||||| |||
Sbjct 2587 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGA 2646
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| | |||||||||| ||| | || | ||| || || | |||||||| |||||
Sbjct 2647 ATACCCTCCTTGTCC-TGAATCTTGGACTTGACATTATCG--ATGGTGTCGCTGGACTCG 2703
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCA 41840
|| || | || || || || || ||||
Sbjct 2704 ACTTCAAGGGTGATGGTCTTGCCAGTCA 2731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462284519665200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |