Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq507 143 2e-29 seq332 138 1e-27 >seq507 Length=44608 Score = 143 bits (158), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 34502 CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 34561 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||| |||||||||||||| ||||||||||| ||||||| ||| Sbjct 34562 AGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 34621 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||||| ||||||| Sbjct 34622 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGCTGGACTCCA 34679 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | || ||||| || ||||| Sbjct 34680 CCTCAAGGGTGATCGTCTTGCCCGT 34704 >seq332 Length=18159 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||||||||||||| Sbjct 2244 CCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 2303 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || |||||||||||||| |||| || || ||||| | ||| Sbjct 2304 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 2363 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | || ||||| ||||| || Sbjct 2364 ATGCCCTCCTTGTCC-TGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAAC 2422 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 2423 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460 Score = 132 bits (146), Expect = 4e-26 Identities = 157/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || ||| ||||||||||||||| ||||| ||| Sbjct 2527 CCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2586 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| |||||||| |||||||||| ||| Sbjct 2587 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGA 2646 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| | || | ||| || || | |||||||| ||||| Sbjct 2647 ATACCCTCCTTGTCC-TGAATCTTGGACTTGACATTATCG--ATGGTGTCGCTGGACTCG 2703 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCA 41840 || || | || || || || || |||| Sbjct 2704 ACTTCAAGGGTGATGGTCTTGCCAGTCA 2731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462284519665200