Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1144 140 3e-28 seq732 138 1e-27 seq1157 129 6e-25 seq897 123 3e-23 >seq1144 Length=167757 Score = 140 bits (154), Expect = 3e-28 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 ||||| || || |||||| |||| ||||| || |||| | | | | |||| ||||| Sbjct 91177 ACGGGAAAGACTATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACG-TCAAGTC 91235 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 ||| |||| ||||| || ||||||||| |||||||||| || ||||||| || ||||| Sbjct 91236 AAAGATTCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGCAA 91295 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | || |||||| |||||||||||||||||||||| | || || || Sbjct 91296 GCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCA 91355 Query 40893 TCTAGT 40898 ||||| Sbjct 91356 CCTAGT 91361 >seq732 Length=233276 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 60572 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 60513 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 60512 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 60454 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||| |||| || || || ||||| || || | |||||||| | |||||| Sbjct 60453 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 60394 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| ||| || || || || Sbjct 60393 CAACATCCAGAAGGAGAGCACTCTCCACCTGGT 60361 >seq1157 Length=14967 Score = 129 bits (142), Expect = 6e-25 Identities = 200/285 (70%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| |||||| || |||||||||| |||||| | || || Sbjct 10253 ATCTGGCAGATGTACAAGAAGCACGAGGCTTCCTTCTGGACCGCCGAGGAAATTGATCTT 10312 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | |||||||| | | |||| ||| || Sbjct 10313 TCCAAGGATCTGCACGACTGGAATAACCGCTTGAATGCAGATGAGCAGTTCTTCGTCTCT 10372 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || || |||||||| || || || || || || || ||||||||| | Sbjct 10373 CACATTCTCGCTTTCTTCGCCGCATCTGATGGTATTGTGAATGAAAACCTGGTCGAGAGG 10432 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||| | | ||||| || ||||||||||| || |||||| ||| Sbjct 10433 TTCAGTGCCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 10492 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || |||||| ||||| ||| Sbjct 10493 GAGAACATCCACTCAGAGACTTACTCTCTCCTCATTGACACATAC 10537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 302/458 (66%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 |||||| |||| | ||||| |||||||| || | |||||| | | || ||||| || Sbjct 10640 CCGTGCATCAAGAAAAAGGCAGAGTGGGCCCTCAGGTGGATCTCGGACAAGCAGGCCACC 10699 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT-CGG-GCAGTT 117086 || | | || || || || ||||| || |||||||| | || || ||| ||| | Sbjct 10700 TTTGCTCAACGTCTCGTTGCATTCGCTGCTGTCGAGGGTATATTTTTCAGCGGTGCA--T 10757 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 |||| | || || ||| | ||||| || || || ||||| || | || ||| || | Sbjct 10758 TCGCTTCTATCTTCTGGTTGAAGAAGCGAGGTCTTATGCCTGGTTTAACCTTCTCTAATG 10817 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATT 117206 |||||||||| | || |||||||| || ||||| || || | || | ||| Sbjct 10818 AGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTTCGCATGCCTTCTTCACTCTCATC 10877 Query 117207 TGGTGCAGCGACCGAGCGCGGC--GCGCGTCA---GGGAGATCGTCACCGACGCGGTCGC 117261 | || | ||| || | || || || | ||| ||| | || || || ||| | Sbjct 10878 T----CAAGGGCCGTGC-CAGCAAGCAGGTAATTCAGGACATCATTACTGATGCCGTCTC 10932 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCG 117320 ||||| || ||||| ||||| || |||| |||| |||||| || | || | | Sbjct 10933 TATCGAAAAGGAATTCCTGACCGAGGCATTGCCTTGTGC-TCTGCTTGGTATGAACTCGG 10991 Query 117321 AAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380 | ||| ||| |||||||||||||| |||||| | || || ||| || | || Sbjct 10992 ATCTTATGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTTCTTGTCGCTCTTGGTAACG 11051 Query 117381 CCAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418 ||| |||||| | ||||||| | ||||| ||| Sbjct 11052 AGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATG 11089 >seq897 Length=151945 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| | || ||||| || | |||| | | Sbjct 73523 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 73582 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || ||| |||||||||| || || Sbjct 73583 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTG 73642 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| || || || || | ||||||||| ||||||||||||||||||| Sbjct 73643 ATCTTTGCTGGCAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 73702 Query 40879 G 40879 | Sbjct 73703 G 73703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210570078400