Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1144 122 2e-22 seq1157 84.2 5e-11 >seq1144 Length=167757 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || ||||| || |||| || || || || || ||||| Sbjct 91861 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGTGTTCGGCCATCCTCAAGCTGCTTTCCG 91802 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| || || ||||| ||||| || |||||||| ||||| | || Sbjct 91801 GCGAAAATGAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTATCCTGGATCTTCGACTTA 91742 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | || ||||| || ||||||||||| ||||| || || Sbjct 91741 ACGTTGTCAATAGTGTCGGACGACTCCACCTCGAGGGTAATAGTCTTGCCAGTGAGAGTC 91682 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 91681 TTGACGAAAATCTGCAT 91665 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| ||||| ||||| || || |||| || || || || || || ||| Sbjct 91633 GTAGACTCTTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 91574 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || ||||| || ||||||||||||| || Sbjct 91573 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGAATCTTTGACTTA 91514 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || ||||| || || || ||||| ||||| || || Sbjct 91513 ACGTTGTCGATGGTATCAGAAGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 91454 Query 104543 TTTAC 104547 || || Sbjct 91453 TTGAC 91449 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || ||||| || | ||||| || ||||| || || ||||| || || |||| || || Sbjct 91364 AGGACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 91305 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| || || || || || ||||| || ||| Sbjct 91304 TCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 91245 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||||| || || || || | ||||||| | || ||||| || || |||||| Sbjct 91244 TGAATCTTTGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATAGTC 91185 Query 104528 TTACCAGTAAGTGT 104541 || || || | ||| Sbjct 91184 TTTCCCGTCACTGT 91171 >seq1157 Length=14967 Score = 84.2 bits (92), Expect = 5e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTTTGCCGCTATCTTTTG 269196 ||||| || || ||||| || |||||||| ||| | ||| | || || ||||||| || Sbjct 10715 GTTGCATTCGCTGCTGTCGAGGGTATATT-TTTCAGCGGTGCATTCGCTTCTATCTTCTG 10773 Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 ||||||||| |||| |||||||| || ||||| |||||||| || Sbjct 10774 GTTGAAGAAGCGAGGTCTTATGCCTGGTTTAACCTTCTCTAATGA 10818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151378631928720