Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq349 179 6e-41 seq78 109 9e-20 >seq349 Length=97607 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 20061 GCCAAGCGTCACCGAAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCTGCTAT 20003 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | || | || |||| || |||| Sbjct 20002 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAGGAGAC 19943 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| ||||||| || || |||| ||| || || ||| ||||| Sbjct 19942 CCGTGGTGTCCTGAAGACCTTCCTCGAGGGTGTCATCCGTGACGCCGTCACCTACACCGA 19883 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| || | ||| | ||||| || | || || || || Sbjct 19882 GCACGCCAAGCGCAAGACCGTCACTTCGCTCGATGTTGTCTACGCCCTCAAGCGCCAGGG 19823 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||| ||||| || ||||| Sbjct 19822 CCGCACCCTTTACGGTTTCGGTGGTTAA 19795 >seq78 Length=44846 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| ||| || || |||||||| || |||||||||||||| | Sbjct 16393 CGCCAAGCGTCACCGCAAGAT-TCTACGTGACAACATCCAGGGTATCACCAAGCCAGCCA 16335 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| ||||||||||| || ||||||||| |||||| Sbjct 16334 TCCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 16293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073974828620