Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq761 118 2e-21 seq1157 105 1e-17 seq541 91.5 3e-13 seq712 87.8 4e-12 >seq761 Length=101766 Score = 118 bits (130), Expect = 2e-21 Identities = 433/667 (65%), Gaps = 21/667 (3%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| |||||||||||||||||| |||| || | || || || || | ||| || || | Sbjct 93834 TGTCTGGTGGTTGGAAGATGAAGTTGGCTCTGGCCCGAGCTATGCTGCAGCGCGCTGACG 93775 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 | || || || || || || |||||||| | ||| |||| | || ||||| | | Sbjct 93774 TTCTCCTACTGGACGAACCTACCAACCATCTTGACGTTGACAACATTGCTTGGCTCGAGA 93715 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCC-----TCATTGTCTCTCACGACTCTGG 279880 |||||||| |||| | | || | || | | ||||| || ||||||||||| Sbjct 93714 ACTACCTAA--AGTC-GCACCCTGA--CATCACCAGTTTGATTGTTTCCCACGACTCTGG 93660 Query 279881 CTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAA 279940 ||| | || || | | | |||| ||||| |||| || |||||| | Sbjct 93659 TTTCTTGGACAATGTCACCACCGACATCTACCACTACGAGCCTAACAAGAAGCTGGCTTG 93600 Query 279941 GCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGA 280000 ||| ||||||||| |||| || || | ||||| ||||| |||||| Sbjct 93599 CTACAAGGGCAACCTGGCTGCCTTTGTCGAGCTCCGCCCCGAGGCCAAGAGCTACTACAC 93540 Query 280001 CCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCAC 280060 ||| | |||||| | ||| | |||||| || || ||||| || ||| Sbjct 93539 TCTGTCCGCTTCCACCGTCCAGTTCAAGTTCCCTCCTCCTGGAATTCTGACTGGTGTCAA 93480 Query 280061 ATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGC 280118 || | ||| || ||||| ||| || ||| || ||| ||| ||||||| | Sbjct 93479 GTCGCAAACTCGAGCCATCATCCGAATGACCAA--CGTGTCATTTAGTTACCCCAATGCC 93422 Query 280119 CCCAACATCTTCAG---CAG-TGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGT 280174 ||||| ||||| | | |||| | ||| | || || || || ||| | Sbjct 93421 CCCAAGC-CTTCACTCTCGGATGTCTCTTGCCAGCTCTCCCTGTCTTCTCGTGTTGCCAT 93363 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||||| ||||| ||||| || ||||| ||||| || || | || ||||| ||||| Sbjct 93362 CATTGGCCCCAACGGTGCTGGAAAGTCGACCCTTATTAAGCTACTTACTGGTGAGACTAT 93303 Query 280235 GGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 || | || || | | | ||||||||||||| |||| || | ||| || || | Sbjct 93302 TCCCTCC-AGCGGCAAGGTCGAGAAGCATCCCAACTTGCGTATCGGCTACATCAAGCAAC 93244 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 ||||| | | || | |||| ||| |||| | |||||| ||||| ||| ||||||||| Sbjct 93243 ACGCTCTGGAACATGTTGAGATGCACTTGGAGAAGACTCCAAACCAGTACCTTCAGTGGC 93184 Query 280354 GCTATGC 280360 | ||||| Sbjct 93183 GATATGC 93177 >seq1157 Length=14967 Score = 105 bits (116), Expect = 1e-17 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 251541 TTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTC 251600 ||| || ||| |||||| || ||||| |||| ||| || | || ||||| ||| Sbjct 11149 TTGGTAATCACCTACACGCTTCTCAAAGAAGTTAGTCTTACCACCGAGGGAGATATTCTC 11090 Query 251601 CATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGAT 251660 |||||||||||||||||| || | ||||| ||| | ||||| || || |||| Sbjct 11089 CATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTCTCGTTACCAAGAGCGAC-AAGAA 11031 Query 251661 G-CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATAC 251719 | ||||| || || ||||| | ||||| ||| || || |||||||| |||| || | Sbjct 11030 GACGGTCGGCAACGAACTCGATGTACTGCTTCATAAGATCCGAGTTCATACCAAGCAGAG 10971 Query 251720 GACAAGGAATTGCCTCACAGATGAATTCCTTTTCG 251754 |||||| | |||||| | ||||||||||||| Sbjct 10970 CACAAGGCAATGCCTCGGTCAGGAATTCCTTTTCG 10936 >seq541 Length=473379 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 247509 GGTGAGGATCTCTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 247450 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| | |||||||| | || || ||||| ||||||||| || | Sbjct 247449 CAGACTCACCTCCGTCTTAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 247390 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 247389 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 247331 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 247330 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 247289 >seq712 Length=126004 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 216937 TATATTCCCGAGATGATCTTTGGGCATCTTTTGTCTGGCGAGAACTTTGATGATACAGAG 216996 |||||||| ||| | || ||||| ||||| ||| |||| ||||||||||| || ||| Sbjct 102636 TATATTCCAGAGCTCATTTTTGGACATCTGTTGGCTGGTTCCAACTTTGATGACACCGAG 102695 Query 216997 GAGCGCACCGGAGCTGGTCGCAATGGCTATGGTTCCAAGCTCACCAACATCTTCAGCA 217054 || | || | | |||||| ||||| |||||| |||||||| ||| | ||||||| Sbjct 102696 AAGAGAACAGTTGGTGGTCGAAATGGTTATGGTGCCAAGCTCTGTAACGTTTTCAGCA 102753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819153326940