Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1157 131 4e-25 seq541 89.7 1e-12 >seq1157 Length=14967 Score = 131 bits (144), Expect = 4e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 ||||| || || || || | ||||||||||||| | ||| || | || || Sbjct 10913 ATCATTACTGATGCCGTCTCTATCGAAAAGGAATTCCTGACCGAGGCATTGCCTTGTGCT 10972 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || |||| |||||||| || || ||| ||||||||||| ||||| |||||||| || Sbjct 10973 CTGCTTGGTATGAACTCGGATCTTATGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTT 11032 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| |||||| | ||||| || ||||| || | |||||||| | ||| |||||| Sbjct 11033 CTTGTCGCTCTTGGTAACGAGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAG 11092 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || || || || || ||||||||||| || |||||||| ||||||| ||| Sbjct 11093 AATATCTCCCTCGGTGGTAAGACTAACTTCTTTGAGAAGCGTGTAGGTGATTACCAA 11149 >seq541 Length=473379 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| |||| || |||||||| || || || || || | || Sbjct 247336 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 247395 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || || ||||||||||| | |||||||| ||| || | || | ||| || Sbjct 247396 GTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTAAGACGGAGGTGAGTCTGGTTGAG 247455 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||||| || |||| || || ||||| || ||| | || ||||||||||| Sbjct 247456 AAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAGAGATCCTCACC 247509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102861064929000