Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1157 89.7 6e-13 >seq1157 Length=14967 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 ||||| || ||| || || ||||| || | | || | |||||||| || |||||| Sbjct 10860 CATGCGAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCATTAGAGAAGGTTAAA 10801 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| || |||| || || |||||||| |||||||| |||| || || ||| Sbjct 10800 CCAGGCATAAGACCTCGCTTCTTCAACCAGAAGATAGAAGCGAATGCACCGCTGAAAAAT 10741 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAG 19109 ||||| || || || || || ||||| || Sbjct 10740 ATACCCTCGACAGCAGCGAATGCAACGAG 10712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099384677600