Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1144 113 4e-19 >seq1144 Length=167757 Score = 113 bits (124), Expect = 4e-19 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || || || ||||| || || ||| |||||||||| || |||| Sbjct 91883 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGAGAGTGTTCG 91824 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || |||||||| ||||| |||| ||||| || ||||||||||| || Sbjct 91823 GCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCCGGAGGAATTCCCTC 91764 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| || || || || || ||||| || || | || | || ||||| | Sbjct 91763 CTTATCCTGGATCTTCGACTTAACGTTGTCAATAGTGTC-GGACGACTCCACCTCGAGGG 91705 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || ||||| ||||| || |||||||| |||||| Sbjct 91704 TAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATA 91664 Score = 107 bits (118), Expect = 2e-17 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| ||||| |||||||| || || ||| |||||||||| || |||| Sbjct 92111 GAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGAGAGGGTTCG 92052 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || |||||||| ||||| |||| ||||| || ||||||||||| || Sbjct 92051 GCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCCGGAGGAATTCCCTC 91992 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| || || || || || ||||| || || | ||| | | || || | Sbjct 91991 CTTATCCTGGATCTTCGACTTAACGTTGTCAATAGTGTC-GGATGACTCGACCTCAAGGG 91933 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || || ||||| | ||| || || || ||||||||| Sbjct 91932 TAATCGTCTTTCCAGTCAAAGTCTTCACAAAGATTTGCATA 91892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029225134756600