Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016
-07-28] 1,340 sequences; 51,439,042 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq605 223 4e-52
seq1280 122 1e-21
seq907 109 7e-18
seq1157 89.7 6e-12
seq520 89.7 6e-12
>seq605
Length=94163
Score = 223 bits (246), Expect = 4e-52
Identities = 289/397 (73%), Gaps = 8/397 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | |||| |||||||||||| | ||||| | | |
Sbjct 3309 GGCGAGTCCCACGGCAAGTCCGTCTCGTGCATCATCGACAACTGCCCGCCCAACCTCGCC 3368
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGC-GCACT 18218
|| ||||||||||||||||||| ||| | | || ||||| || |||||| | ||| |
Sbjct 3369 CTCACCGAGGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCCGGCCAGTCCAGCA-T 3427
Query 18219 TTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278
|||| |||||||||||| ||||| |||| ||||| |||||||| ||||| ||| |
Sbjct 3428 CACCACCCCGCGCAACGAGAAGGATCGGGTCACGATCCACTCGGGCACAGAGAATGGCGT 3487
Query 18279 CACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTA 18338
|||||||||| | ||| || ||| || ||||| |||||||| ||| |||||
Sbjct 3488 CACGCTCGGCACCCCCATCCTCCTGACGGTCCCCAACGAAGACCAGCGCCCCAAGGACTA 3547
Query 18339 TTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGC 18392
| | ||| | || | ||||| ||||| |||||||||| |||||| |||
Sbjct 3548 TGGCAACAAGACCATCGACCTCTACCCGCGCCCCTCCCACGCCGACTGGACCTACCTGGA 3607
Query 18393 CAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCAT 18452
||||| ||| ||||||| ||||| ||||||||||| |||||||||||| |
Sbjct 3608 AAAGTATGGCGTCAAGGCCTCGTCCGGCGGAGGCCGCAGCAGCGCCCGCGAGACCATTGC 3667
Query 18453 GCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489
|| ||||||||||| || ||||||||||||||||||
Sbjct 3668 CCGAGTCGCCGCCGGTGCCGTCGCCGAGAAATGGCTC 3704
Score = 96.9 bits (106), Expect = 4e-14
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| || ||||| || || || || ||||||| || | || || |||||
Sbjct 3924 GACAGCACTGGTGGCACCGTCACCTGTGTCATCCGCAACGCCCCCGTCGGGCTGGGCGAA 3983
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||| |||||| |||||||| |||||||||||||||||| || ||||| ||| |
Sbjct 3984 CCCGCCTTCGACAAGCTCGAGGCCCTGCTCGCCCACGCCATGCTCTCCATCCCCGCCGTC 4043
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192
|||| || ||||||||| ||| ||
Sbjct 4044 AAGGCCTTTGAGATTGGCTCCGGCTT 4069
>seq1280
Length=530099
Score = 122 bits (134), Expect = 1e-21
Identities = 90/105 (86%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||| | ||||||||||| || |||||| | || |||||| | || ||||||||||
Sbjct 30933 CCAACTACTTGGACATCAAGCCCCTTCTCGATGTCGGCTGCAAGACCGTCGCCAACATGA 30992
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||| ||||||||||| ||||| || || |||||||
Sbjct 30993 TCAAGGGCAAGTCCCCCGAGGAGATTCGCAAAACATTCAACATCA 31037
>seq907
Length=75695
Score = 109 bits (120), Expect = 7e-18
Identities = 212/313 (68%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| || || || || || |||| ||| || || ||||||||||| | ||||||||
Sbjct 18264 CTGATCAACATATCGAGCAGTGTTGTTGAATACACGGAGCATGGGTGTCACACCGTTGGA 18323
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | || | ||| | ||| || | ||| || | ||
Sbjct 18324 GGTACCGTTGGTACCGGCAATATAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACC 18383
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||| || ||| |||||||| | || || ||||| ||||| || || |||||
Sbjct 18384 GATGCCACCAGCCATTTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAAATACCCTC 18443
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||||||||| || || ||||| || || || || || | || ||
Sbjct 18444 AATACTGTCCTCCTTCATGTCGACCAGGAAGCATGAAGACAGCTGGGGCTGAGGAGTACC 18503
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || ||||| |||| | |||||| || ||||||
Sbjct 18504 AGCGTTGAAGAGTGTGGGAGAAGCATGTGTGAAGAACTTCATGGACATGAGGTTGTAGGT 18563
Query 1630365 GGCGAGCACGCGC 1630377
|||| || |||
Sbjct 18564 CTCGAGGACACGC 18576
>seq1157
Length=14967
Score = 89.7 bits (98), Expect = 6e-12
Identities = 162/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| ||| || ||||| ||||| || |||| |||||
Sbjct 11154 GCCTTTTGGTAATCACCTACACGCTTCTCAAAGAAGTTAGTCTTACCACCGAGGGAGATA 11095
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | ||||||| ||| ||| || |||||||
Sbjct 11094 TTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTCTCGTTACCAAGAGCGACA 11035
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
|| || |||||||| || |||||||||||||| ||| || | | |||||| || |
Sbjct 11034 AGA--AGACGGTCGGCAACGAACTCGATGTACTGCTTCATAAGATCCGAGTTCATACCAA 10977
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
|| || |||| | |||| ||| || || || ||||| |||||| ||
Sbjct 10976 GCAGAGCACAAGGCAATGCCTCGGTCAGGAATTCCTTTTCGATAGAGACGGCATC 10922
>seq520
Length=35863
Score = 89.7 bits (98), Expect = 6e-12
Identities = 133/187 (71%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116
||| || |||| || |||||| | |||||||||||||| ||||| || | || || |
Sbjct 20591 CCTCCCTGCCGGCCGACACAAGCTTATCATCCTCGACGAAGCCGATAGCATGACCTCCGG 20650
Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176
|||||||| || || || || ||||||| || |||||||||| || ||||| |
Sbjct 20651 AGCCCAGCAAGCTCTCCGACGAACAATGGAAATTTACTCCAACACGACCCGATTTGCATT 20710
Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTC--GCTGCGCCATTCTG 1574234
|| || ||| |||| | |||||||| ||| |||| | |||||||||||
Sbjct 20711 TGCTTGTAACCAGTCGAATAAAATCATCGAG--CCTTTGCAGTCGAGATGCGCCATTCTT 20768
Query 1574235 CGCTTTG 1574241
|||| ||
Sbjct 20769 CGCTATG 20775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107029233324780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |