Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq605 223 4e-52 seq1280 122 1e-21 seq907 109 7e-18 seq1157 89.7 6e-12 seq520 89.7 6e-12 >seq605 Length=94163 Score = 223 bits (246), Expect = 4e-52 Identities = 289/397 (73%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | |||| |||||||||||| | ||||| | | | Sbjct 3309 GGCGAGTCCCACGGCAAGTCCGTCTCGTGCATCATCGACAACTGCCCGCCCAACCTCGCC 3368 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGC-GCACT 18218 || ||||||||||||||||||| ||| | | || ||||| || |||||| | ||| | Sbjct 3369 CTCACCGAGGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCCGGCCAGTCCAGCA-T 3427 Query 18219 TTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278 |||| |||||||||||| ||||| |||| ||||| |||||||| ||||| ||| | Sbjct 3428 CACCACCCCGCGCAACGAGAAGGATCGGGTCACGATCCACTCGGGCACAGAGAATGGCGT 3487 Query 18279 CACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTA 18338 |||||||||| | ||| || ||| || ||||| |||||||| ||| ||||| Sbjct 3488 CACGCTCGGCACCCCCATCCTCCTGACGGTCCCCAACGAAGACCAGCGCCCCAAGGACTA 3547 Query 18339 TTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGC 18392 | | ||| | || | ||||| ||||| |||||||||| |||||| ||| Sbjct 3548 TGGCAACAAGACCATCGACCTCTACCCGCGCCCCTCCCACGCCGACTGGACCTACCTGGA 3607 Query 18393 CAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCAT 18452 ||||| ||| ||||||| ||||| ||||||||||| |||||||||||| | Sbjct 3608 AAAGTATGGCGTCAAGGCCTCGTCCGGCGGAGGCCGCAGCAGCGCCCGCGAGACCATTGC 3667 Query 18453 GCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489 || ||||||||||| || |||||||||||||||||| Sbjct 3668 CCGAGTCGCCGCCGGTGCCGTCGCCGAGAAATGGCTC 3704 Score = 96.9 bits (106), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| || ||||| || || || || ||||||| || | || || ||||| Sbjct 3924 GACAGCACTGGTGGCACCGTCACCTGTGTCATCCGCAACGCCCCCGTCGGGCTGGGCGAA 3983 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||| |||||| |||||||| |||||||||||||||||| || ||||| ||| | Sbjct 3984 CCCGCCTTCGACAAGCTCGAGGCCCTGCTCGCCCACGCCATGCTCTCCATCCCCGCCGTC 4043 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| || ||||||||| ||| || Sbjct 4044 AAGGCCTTTGAGATTGGCTCCGGCTT 4069 >seq1280 Length=530099 Score = 122 bits (134), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||| | ||||||||||| || |||||| | || |||||| | || |||||||||| Sbjct 30933 CCAACTACTTGGACATCAAGCCCCTTCTCGATGTCGGCTGCAAGACCGTCGCCAACATGA 30992 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| ||||||||||| ||||| || || ||||||| Sbjct 30993 TCAAGGGCAAGTCCCCCGAGGAGATTCGCAAAACATTCAACATCA 31037 >seq907 Length=75695 Score = 109 bits (120), Expect = 7e-18 Identities = 212/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || || || || || |||| ||| || || ||||||||||| | |||||||| Sbjct 18264 CTGATCAACATATCGAGCAGTGTTGTTGAATACACGGAGCATGGGTGTCACACCGTTGGA 18323 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | || | ||| | ||| || | ||| || | || Sbjct 18324 GGTACCGTTGGTACCGGCAATATAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACC 18383 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| || ||| |||||||| | || || ||||| ||||| || || ||||| Sbjct 18384 GATGCCACCAGCCATTTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAAATACCCTC 18443 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || || ||||| || || || || || | || || Sbjct 18444 AATACTGTCCTCCTTCATGTCGACCAGGAAGCATGAAGACAGCTGGGGCTGAGGAGTACC 18503 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || ||||| |||| | |||||| || |||||| Sbjct 18504 AGCGTTGAAGAGTGTGGGAGAAGCATGTGTGAAGAACTTCATGGACATGAGGTTGTAGGT 18563 Query 1630365 GGCGAGCACGCGC 1630377 |||| || ||| Sbjct 18564 CTCGAGGACACGC 18576 >seq1157 Length=14967 Score = 89.7 bits (98), Expect = 6e-12 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| || ||||| ||||| || |||| ||||| Sbjct 11154 GCCTTTTGGTAATCACCTACACGCTTCTCAAAGAAGTTAGTCTTACCACCGAGGGAGATA 11095 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| ||| || ||||||| Sbjct 11094 TTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTCTCGTTACCAAGAGCGACA 11035 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || |||||||| || |||||||||||||| ||| || | | |||||| || | Sbjct 11034 AGA--AGACGGTCGGCAACGAACTCGATGTACTGCTTCATAAGATCCGAGTTCATACCAA 10977 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 || || |||| | |||| ||| || || || ||||| |||||| || Sbjct 10976 GCAGAGCACAAGGCAATGCCTCGGTCAGGAATTCCTTTTCGATAGAGACGGCATC 10922 >seq520 Length=35863 Score = 89.7 bits (98), Expect = 6e-12 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116 ||| || |||| || |||||| | |||||||||||||| ||||| || | || || | Sbjct 20591 CCTCCCTGCCGGCCGACACAAGCTTATCATCCTCGACGAAGCCGATAGCATGACCTCCGG 20650 Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 |||||||| || || || || ||||||| || |||||||||| || ||||| | Sbjct 20651 AGCCCAGCAAGCTCTCCGACGAACAATGGAAATTTACTCCAACACGACCCGATTTGCATT 20710 Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTC--GCTGCGCCATTCTG 1574234 || || ||| |||| | |||||||| ||| |||| | ||||||||||| Sbjct 20711 TGCTTGTAACCAGTCGAATAAAATCATCGAG--CCTTTGCAGTCGAGATGCGCCATTCTT 20768 Query 1574235 CGCTTTG 1574241 |||| || Sbjct 20769 CGCTATG 20775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107029233324780