Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1144 154 4e-32 seq1272 132 1e-25 seq1293 127 6e-24 seq732 91.5 4e-13 seq531 87.8 5e-12 seq897 86.0 2e-11 >seq1144 Length=167757 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || || || ||||| || ||||| || | Sbjct 91899 TTTGCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGT 91840 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | |||||| ||||| ||||| || ||||| || || || || || ||||| | Sbjct 91839 AATCAGAGAGTGTTCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGT 91780 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||||||||| || |||||||| || || | || || || ||||| | || || | Sbjct 91779 CCGGAGGAATTCCCTCCTTATCCTGGATCTTCGACTTAACGTTGTCAATAGTGTCGGACG 91720 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| || || || || || || ||||||||||| Sbjct 91719 ACTCCACCTCGAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 91665 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| ||| ||||| | | || ||||| ||||| || ||||| || ||||| || | Sbjct 92127 TTTACTGACCGCCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGT 92068 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | ||||| ||||| ||||| || ||||| || || || || || ||||| | Sbjct 92067 AATCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGT 92008 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||||||||| || |||||||| || || | || || || ||||| | || |||| Sbjct 92007 CCGGAGGAATTCCCTCCTTATCCTGGATCTTCGACTTAACGTTGTCAATAGTGTCGGATG 91948 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| |||| |||||||| || | || || ||||| || ||||| Sbjct 91947 ACTCGACCTCAAGGGTAATCGTCTTTCCAGTCAAAGTCTTCACAAAGATTTGCAT 91893 Score = 134 bits (148), Expect = 4e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || ||||||||||| || ||||| || || Sbjct 91667 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTC 91608 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 91607 GGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGG 91548 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || |||||||| || | || || || || || | |||||| | || Sbjct 91547 GGGGATGCCTTCCTTGTCCTGAATCTTTGACTTAACGTTGTCGATGGTATCAGAAGACTC 91488 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 91487 GACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 91449 Score = 127 bits (140), Expect = 6e-24 Identities = 167/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 140491 TCAAACTAATAT-TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCT 140549 ||||||| | | ||| |||||||||||| | | || || || || || |||||||| Sbjct 91400 TCAAACTTACAGATTTGCATACCACCACGGAGGCGGAGGACTAGGTGGAGGGTAGACTCC 91341 Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | ||||| ||||| ||||| || || ||||||||||| Sbjct 91340 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATG 91281 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| ||||| || || || || ||||| || |||||||| || | || || || || Sbjct 91280 AGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGAATCTTTGACTTGACGTTGTCG 91221 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || | ||| || | || || || || || | |||||||| || | ||| Sbjct 91220 ATGGTATCGGAGGACTCGACCTCGAGGGTGATAGTCTTTCCCGTCACTGT 91171 >seq1272 Length=124026 Score = 132 bits (146), Expect = 1e-25 Identities = 240/350 (69%), Gaps = 6/350 (2%) Strand=Plus/Plus Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186 ||||| || |||||| ||| || ||||| | | | |||||||||||| ||| Sbjct 88110 CCATCCTCACCATATAGGAACTGCACAATATCTCCGAGAGAGTTTCTTACAGTTCCGTCA 88169 Query 378187 TATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGA 378246 |||| | | | |||||||| | || || | ||||| || ||| |||||||||| Sbjct 88170 TATCGAGCACTCAAATCTTCAAGGGCCTTGACCAGTCGACGCTGAATGTAACCAGTTTCT 88229 Query 378247 CTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAAT 378306 ||| || || ||||||||||| | ||| | |||||| |||| || |||||||| || Sbjct 88230 GCAGTCTTGACAGCAGTATCAATCAGACCCTCGCGACCAGCCATGGCGTGGAAGAAGAAC 88289 Query 378307 TCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAA 378366 || | ||||||||| |||| | | | || |||| | || || | || | || || Sbjct 88290 TCTGAAGGAGTAAGACCACGGAGATAAGAGTTCTCGACGAAACCACGAGCTTCGGGGGAG 88349 Query 378367 TCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTT 378426 | ||||| || ||| |||| || | ||||| | || || || | ||||| || || Sbjct 88350 TAATCATCCTTGGTAAAATGGGGCAGCGTACGGTACTTGAAGCCGAAGGGAATACGCTTA 88409 Query 378427 CCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 || || ||| |||| |||| |||| |||| ||| || | |||||| Sbjct 88410 CCCTCCACAATCTGCTGACCGACAAGAGCAG---TCATCTGCGAAATATT 88456 >seq1293 Length=96073 Score = 127 bits (140), Expect = 6e-24 Identities = 269/400 (67%), Gaps = 1/400 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||||| || || ||||| | || ||| || | |||||| || || | Sbjct 73326 CCCGAGGAAATCTCCTCCATGGTCCTCACCAAGATGCGTGAGACTGCTGAGGCCTACCTC 73385 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||||| || || | ||||||| | || || || ||||| || || || ||| ||| Sbjct 73386 GGTGAGACCGTCAACAATGCTGTCGTCACCGTCCCCGCCTACTTCAACGACAGCCAACGT 73445 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| ||| ||| || || | || || || | || || || ||| Sbjct 73446 CAAGCTACCAAGGATGCCGGCCTCATCGCCGGCCTCAACGTCCTTCGTATCATCAACGAA 73505 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||||||||| || || || ||||| || || || | | ||| || || || Sbjct 73506 CCCACTGCTGCCGCTATCGCTTATGGCCTCGACAAGAAGGTTGAGGGCGAGCGCAACGTT 73565 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || || || || || |||||||| ||||| || || || || | || || || Sbjct 73566 CTCATCTTCGACTTGGGCGGCGGTACTTTCGATGTCTCCCTTCTCACTATCGAGGAAGGC 73625 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | ||||| ||||| || || |||||||| || || || || || Sbjct 73626 ATCTTCGAGGTCAAGTCCACTGCCGGTGACACTCACCTTGGTGGTGAGGACTTCGACAAC 73685 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 || | || || ||||| || ||||| || || |||| Sbjct 73686 CGCTTGGTCAACCACTTTGTGAATGAATTCAAACG-CAAG 73724 >seq732 Length=233276 Score = 91.5 bits (100), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || ||||| ||| || || || || || || Sbjct 60342 ACCACCACGAAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 60401 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 60402 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 60461 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | || || | || || Sbjct 60462 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 60521 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 60522 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 60569 >seq531 Length=591266 Score = 87.8 bits (96), Expect = 5e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 349211 GATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATT 349270 ||||| ||||||||||| ||||| | ||| ||| |||| || ||||| || Sbjct 453724 GATTTGGGTACTACTTACAGCTGTGTCGGTGTGATGCAGAATGGCAAGGTCGAAATTCTT 453665 Query 349271 GCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGT 349330 | |||||||| |||||| ||| || || |||||||| || || ||||| |||||| Sbjct 453664 GTCAATGATCAGGGTAACCGAATTACTCCCTCATACGTCGCCTTCACCGAGGAGGAGCGT 453605 Query 349331 ATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGAT 349390 || ||||||| || || || || ||||| || | || || | || || | || ||| Sbjct 453604 CTGGTTGGTGACTCCGCCAAGAACCAAGCCGCCTCCAACCCCACCAACACCATCTTCGAT 453545 Query 349391 GCTAAG 349396 | |||| Sbjct 453544 GTTAAG 453539 >seq897 Length=151945 Score = 86.0 bits (94), Expect = 2e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || ||||| || ||||||||||| Sbjct 73701 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATC 73642 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || || ||||| || || || ||||| || || | || ||||| || Sbjct 73641 AGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 73582 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | || || ||||| || | ||||| || || || || || || ||| Sbjct 73581 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 73522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515228384976020