Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq881 89.7 5e-13 >seq881 Length=186784 Score = 89.7 bits (98), Expect = 5e-13 Identities = 204/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||| ||||| || || ||||||| |||||||| ||||| |||||||| Sbjct 108194 CGAGACATAGAACTGAGCGAACATGTGGCAGGGGGGGAGGACCATCTTGGGGAGATCGGC 108253 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 || ||||| || || | | | | ||||| |||||| | ||| | || Sbjct 108254 TGGATTCCAGGCAGTCAATATAAGACGGCGGTCATGAGGGTTT-GTGCGAAGCTTGTGAA 108312 Query 6844 CACGTACTGCA-GCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATAC 6901 | || | ||| ||||||| ||||||| |||| || |||| ||| | || ||| Sbjct 108313 TAAGTTCAGCAAGCTGGTCGACTCCCTGGCCCGTGTAATCCGTCTTGTAGTCGACG-TAC 108371 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 || || |||||||| | ||||||||| ||||| || ||||| | |||||||||||| || Sbjct 108372 TCTGCGCCAAAGTGCCGCCACTGGAAGCCGTAAACAGGGCCGAGGTCGCCCTCCTCACGG 108431 Query 6962 GATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACC 7021 || || ||| | || || || || || || || || | | ||||| ||||| | | Sbjct 108432 TGTGTCAAGCCCAGGTTATCGAGGAATTCGCGGGATCCATTTCCATCCCAAATCTTGATC 108491 Query 7022 CC 7023 || Sbjct 108492 CC 108493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 204/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 ||| | ||||| ||||| | | || || || || || || || || | ||| || || Sbjct 108493 GGGATCAAGATTTGGGATGGAAATGGATCCCGCGAATTCCTCGATAACCTGGGCTTGACA 108434 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || |||||||||||| | ||||| || ||||| ||||||||| | |||||||| || Sbjct 108433 CACCGTGAGGAGGGCGACCTCGGCCCTGTTTACGGCTTCCAGTGGCGGCACTTTGGCGCA 108374 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGC-TGCAGTACG 34499 ||||| || | ||| |||| || |||| ||||||| ||||||| ||| | || Sbjct 108373 GAGTA-CGTCGACTACAAGACGGATTACACGGGCCAGGGAGTCGACCAGCTTGCTGAACT 108315 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 | || | ||| | |||||| ||||| | | | | || || ||||| | Sbjct 108314 TATTCACAAGCTTCGCAC-AAACCCTCATGACCGCCGTCTTATATTGACTGCCTGGAATC 108256 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG 34619 | |||||||| ||||| |||||||| ||||||| || || ||||| ||| Sbjct 108255 CAGCCGATCTCCCCAAGATGGTCCTCCCCCCCTGCCACATGTTCGCTCAGTTCTATGTCT 108196 Query 34620 CG 34621 || Sbjct 108195 CG 108194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448254891604800