Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudonaviculata_20[genbank_20GCA_5F001696505.1_202016 -07-28] 1,340 sequences; 51,439,042 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq881 96.9 3e-15 >seq881 Length=186784 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||||||||| || || |||| ||| ||||| ||||| || || || ||||| ||||| || Sbjct 108368 GTACTCTGCGCCAAAGTGCCGCCACTGGAAGCCGTAAACAGGGCCGAGGTCGCCCTCCTC 108427 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | ||| |||||| || || | || || | ||| || || | ||||| ||||| Sbjct 108428 ACGGTGTGTCAAGCCCAGGTTATCGAGGAATTCGCGGGATCCATTTCCATCCCAAATCTT 108487 Query 27618 TACCCCCTTCTCG--GAGAGCTCTTTGGAGTT-TGTGGACCCTCTGACGAACCACAGCAG 27674 | ||| |||| |||||| ||| | || | ||| | ||||| || |||||| || || Sbjct 108488 GATCCCAGCCTCGCTGAGAGC-CTTGGAAGATGTGTTG-CCCTC-GATGAACCAGAGTAG 108544 Query 27675 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 ||| | | |||||| | ||| || | ||| || ||||||||||| Sbjct 108545 TTCCGCAATGACGGCTCTGGTAAAAACTCGCTTCGTGGTGAGGAGGGG 108592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369501165485540