Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12 152 5e-32 seq5 141 1e-28 seq8 138 1e-27 seq2 138 1e-27 seq461 105 7e-18 >seq12 Length=1358207 Score = 152 bits (168), Expect = 5e-32 Identities = 271/389 (70%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| ||| | ||||||| |||||||| |||| |||||| | | || || || || Sbjct 114085 CCTTGCATCAGAAAGAAGGCTGAGTGGGCATTGCGGTGGATCTCAGACAAGCAGTCCACC 114144 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| | ||||| || ||||| || || || |||||| ||||||| || ||| Sbjct 114145 TTCGCTCAACGCCTTGTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTT 114204 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| || ||||||||||| |||||||||||||| || |||| ||| ||||| Sbjct 114205 GCTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAA 114264 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT--GTTCAAGCATT 117206 || |||||| | || ||||| ||||| |||||| || || |||| || | || Sbjct 114265 CTGATCTCCCGTGATGAGGGCCTGCACACCGACTTCGCTTGCCTGCTCCACTCTCACCTT 114324 Query 117207 TGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCG 117266 | || | | | | || | | ||| ||| ||| ||||||| || ||| | |||| Sbjct 114325 AAGGGCCGTGCCAGCAAGC-AAGTGATTCA-GGATATCATCACCGATGCTGTCACTATCG 114382 Query 117267 AGCAGCGCTTCCTCACCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACG 117325 || || || ||||| ||||||| | || |||| | | || || | || | ||| Sbjct 114383 AGAAGGAATTTCTCACTGAAGCGCTTCCCTGTGC-TTTACTCGGCATGAACTCCGATCTC 114441 Query 117326 ATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||| |||||| || |||||||| ||||| Sbjct 114442 ATGAAGCAATATATTGAGTTCGTAGCCGA 114470 Score = 123 bits (136), Expect = 3e-23 Identities = 201/286 (70%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| |||||| ||||||||||| | ||||| | || || Sbjct 113698 ATCTGGCAAATGTACAAGAAGCACGAGGCCTCGTTCTGGACTGCTGAGGAAATTGATCTT 113757 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | |||||| | ||| |||| | |||||| || | Sbjct 113758 TCCAAGGATTTGCATGACTGGAACAACCGCCTGAATGCAGACGAGCAGTTCTTTGTTTCC 113817 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 ||| | || || || || ||||| || ||||||||||||||||| ||||||||||| Sbjct 113818 CACATTCTTGCTTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTGGTCGAGCGA 113877 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || || ||| | | ||||| || || ||||| ||||| |||||| || Sbjct 113878 TTTAGCGC-TGAAGTTCAGATCCCGGAGGCCCGTTGTTTCTATGGCTTCCAGATCATGAT 113936 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || ||||||||||| ||| Sbjct 113937 GGAGAACATCCACTCTGAGACCTACTCTCTGCTCATCGACACATAC 113982 >seq5 Length=2272025 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 1174881 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1174822 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||||||| ||||| Sbjct 1174821 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 1174762 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| || || || ||||| || |||| |||||||| | ||||||| Sbjct 1174761 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTAC 1174702 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| ||| || || Sbjct 1174701 AACATCCAGAAGGAGAGCACCCTCCA 1174676 >seq8 Length=1962940 Score = 138 bits (152), Expect = 1e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| | || ||||| || | |||| | | Sbjct 146363 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 146422 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 146423 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 146482 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 146483 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 146542 Query 40879 GAGG 40882 | || Sbjct 146543 GTGG 146546 >seq2 Length=4202288 Score = 138 bits (152), Expect = 1e-27 Identities = 145/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||||||||| |||||||| | || ||||| || |||||| | | | |||| ||||| Sbjct 1893935 TCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAAG 1893877 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| |||||||| ||| |||||||||| || || |||| || || Sbjct 1893876 TCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGT 1893817 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || |||||| |||||||||||||||||||||| |||| || Sbjct 1893816 AAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 1893757 Query 40891 CATCTAGT 40898 || || || Sbjct 1893756 CACCTGGT 1893749 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| | || || || || |||||| | | Sbjct 1893663 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCG 1893604 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | | ||| || || | ||||| |||||||| ||| |||||||||| || || | Sbjct 1893603 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGA 1893544 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | ||| || || ||||| || |||| ||||| || |||||||||||| ||||||| Sbjct 1893543 TTTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGG 1893484 Query 40880 AGGCCACGCTGCATCTAGTGTTGCG 40904 | |||| || || || || |||| Sbjct 1893483 AATCCACCCTCCACCTTGTCCTGCG 1893459 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || ||||| || | || || || | | Sbjct 1893445 ATGCAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCT 1893386 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || |||| ||||| ||||| |||||| |||||||| Sbjct 1893385 GATACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1893326 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || |||| |||||||| | |||||||||| Sbjct 1893325 CAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAAC 1893266 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| |||| || || || || Sbjct 1893265 ATTCAGAAGGAATCCACCCTCCACCTTGT 1893237 >seq461 Length=561 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || |||||||||||| | || || || | || Sbjct 130 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCC 189 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || || ||| | ||||| Sbjct 190 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 248 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| ||| || |||||||| || |||| | |||||| ||||||||| Sbjct 249 ACAGAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAA 308 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || || ||| Sbjct 309 CATCCAGAAGGAATCAACCCTCCAT 333 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 || || |||||| | || |||||| || | |||| ||| || |||||||| || |||| Sbjct 1 GAAGGTATCCCCCCAGATCAGCAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGC 60 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || |||||| ||||||||||||||| |||||| | || || ||| Sbjct 61 CGTACCCTCGCCGACTACAACATCCAAAAGGAGTCAACCCTCCAT 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216018521440