Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 3e-21
seq2 107 2e-18
seq461 100 2e-16
seq8 95.1 1e-14
seq12 84.2 2e-11
>seq5
Length=2272025
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||| || || |||||||| ||||||| ||||| ||||||
Sbjct 1174670 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCG 1174729
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || |||||||| || || || ||||||||||||||
Sbjct 1174730 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 1174789
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | ||| ||
Sbjct 1174790 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 1174849
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || || ||||||||
Sbjct 1174850 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1174878
>seq2
Length=4202288
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || || || | ||||| || || || || ||||||||||| |||
Sbjct 1893445 TACCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1893504
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| |||||| ||||||||||| ||||| ||| | || ||||||||||| || || |
Sbjct 1893505 ACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGG 1893564
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| || || || || | |||| |||||| | | ||| |
Sbjct 1893565 GAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAA 1893624
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||| | || | || ||||| || || || || ||
Sbjct 1893625 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || || || || ||||||||||| ||||||| ||||| |||||||||||
Sbjct 1893242 GTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTG 1893301
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| ||||| |||| ||||||||||| || || || || ||||||||||| ||| ||
Sbjct 1893302 CTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT 1893361
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||| || | ||| ||||| | || | || || || ||
Sbjct 1893362 AGACTTCACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTCTTTCCAGT 1893421
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
| || || || || || |||||
Sbjct 1893422 TAAGGTCTTGACGAAGATTTGCAT 1893445
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||| | || || |||||
Sbjct 1893749 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCA 1893808
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| ||||||||||| || || || |||||||||||||| |
Sbjct 1893809 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 1893868
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | | ||||||||| | || | || |||
Sbjct 1893869 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 1893928
Query 118710 CCGGT 118714
|| ||
Sbjct 1893929 CCCGT 1893933
>seq461
Length=561
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| |||| || || || || || |||||||| ||| | || | || ||
Sbjct 338 ACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCT 279
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||||||||| ||| |||| | | ||| || || || || || || ||||||||
Sbjct 278 AGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 219
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | |||||| ||||| | ||| | |||||
Sbjct 218 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTT 159
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||||| ||||| ||||| |||||||||
Sbjct 158 CCGGTCAAGGTTTTCACAAAGATCTGCATG 129
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||||||||| || ||| || || || || ||||||||
Sbjct 554 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCG 495
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | | |||||| || || || || ||||||||||| || || ||
Sbjct 494 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 435
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| | |||||| ||||| | || | ||| || || |||| ||
Sbjct 434 ACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTC 375
Query 118722 TTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 374 TTCACGAAAATCTGCAT 358
>seq8
Length=1962940
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| |||||| ||||| || || ||| ||||
Sbjct 146541 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 146482
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| |||||||| || || || |||||||||||||| || || || || | |||
Sbjct 146481 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 146422
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||||||||| | ||| | || ||||| || || || || || |||
Sbjct 146421 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 146362
>seq12
Length=1358207
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45069 TCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGG 45128
|| |||| || || | ||||||| ||||||| | |||| || || ||| | ||
Sbjct 114362 TCACCGATGCTGTCACTATCGAGAAGGAATTTCTCACTGAAGCGCTTCCCTGTGCTTTAC 114421
Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188
| || |||||| | || | |||| | || |||||||| || |||||||||||||| |
Sbjct 114422 TCGGCATGAACTCCGATCTCATGAAGCAATATATTGAGTTCGTAGCCGATCGTCTTCTTG 114481
Query 45189 TCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATA 45248
| | || ||| ||||| | || |||||| ||||| |||||| | || |
Sbjct 114482 TTGCCCTCGGCAATGAGAAGGTGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACA 114541
Query 45249 TTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297
|||| | | ||||| || || || || ||||| || ||||| || ||
Sbjct 114542 TTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 114590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827788069848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |