Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq2 107 2e-18 seq461 100 2e-16 seq8 95.1 1e-14 seq12 84.2 2e-11 >seq5 Length=2272025 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||| || || |||||||| ||||||| ||||| |||||| Sbjct 1174670 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCG 1174729 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 1174730 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 1174789 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 1174790 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 1174849 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 1174850 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1174878 >seq2 Length=4202288 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || || | ||||| || || || || ||||||||||| ||| Sbjct 1893445 TACCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1893504 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| ||||||||||| ||||| ||| | || ||||||||||| || || | Sbjct 1893505 ACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGG 1893564 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| |||||| | | ||| | Sbjct 1893565 GAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAA 1893624 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| | || | || ||||| || || || || || Sbjct 1893625 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || ||||||||||| ||||||| ||||| ||||||||||| Sbjct 1893242 GTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTG 1893301 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| ||||||||||| || || || || ||||||||||| ||| || Sbjct 1893302 CTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT 1893361 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||| || | ||| ||||| | || | || || || || Sbjct 1893362 AGACTTCACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTCTTTCCAGT 1893421 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || ||||| Sbjct 1893422 TAAGGTCTTGACGAAGATTTGCAT 1893445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| | || || ||||| Sbjct 1893749 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCA 1893808 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || || || |||||||||||||| | Sbjct 1893809 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 1893868 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||||||||| | || | || ||| Sbjct 1893869 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 1893928 Query 118710 CCGGT 118714 || || Sbjct 1893929 CCCGT 1893933 >seq461 Length=561 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || || || || || |||||||| ||| | || | || || Sbjct 338 ACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCT 279 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| |||| | | ||| || || || || || || |||||||| Sbjct 278 AGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 219 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | |||||| ||||| | ||| | ||||| Sbjct 218 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTT 159 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| ||||| ||||| ||||||||| Sbjct 158 CCGGTCAAGGTTTTCACAAAGATCTGCATG 129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| || ||| || || || || |||||||| Sbjct 554 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCG 495 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || || || || ||||||||||| || || || Sbjct 494 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 435 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | |||||| ||||| | || | ||| || || |||| || Sbjct 434 ACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTC 375 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 374 TTCACGAAAATCTGCAT 358 >seq8 Length=1962940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||| ||||| || || ||| |||| Sbjct 146541 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 146482 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 146481 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 146422 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||||||||| | ||| | || ||||| || || || || || ||| Sbjct 146421 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 146362 >seq12 Length=1358207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45069 TCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGG 45128 || |||| || || | ||||||| ||||||| | |||| || || ||| | || Sbjct 114362 TCACCGATGCTGTCACTATCGAGAAGGAATTTCTCACTGAAGCGCTTCCCTGTGCTTTAC 114421 Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188 | || |||||| | || | |||| | || |||||||| || |||||||||||||| | Sbjct 114422 TCGGCATGAACTCCGATCTCATGAAGCAATATATTGAGTTCGTAGCCGATCGTCTTCTTG 114481 Query 45189 TCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATA 45248 | | || ||| ||||| | || |||||| ||||| |||||| | || | Sbjct 114482 TTGCCCTCGGCAATGAGAAGGTGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACA 114541 Query 45249 TTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 |||| | | ||||| || || || || ||||| || ||||| || || Sbjct 114542 TTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 114590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827788069848